KEGG   PATHWAY: eee04120
Entry
eee04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Electrophorus electricus (electric eel)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
eee04120  Ubiquitin mediated proteolysis
eee04120

Other DBs
GO: 0016567
Organism
Electrophorus electricus (electric eel) [GN:eee]
Gene
113567673  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
113567788  [KO:K04649] [EC:2.3.2.23]
113568031  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
113568046  ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
113568490  [KO:K20217] [EC:2.3.2.23]
113568491  [KO:K20217] [EC:2.3.2.23]
113569662  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
113569680  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
113569865  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
113569960  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
113570086  [KO:K03364]
113570267  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
113570395  [KO:K04554] [EC:2.3.2.23]
113570596  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
113570666  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
113570846  ddb1; DNA damage-binding protein 1 [KO:K10610]
113571017  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
113571447  socs3; suppressor of cytokine signaling 3 [KO:K04696]
113571604  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
113571622  [KO:K03178] [EC:6.2.1.45]
113571624  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
113571667  [KO:K05632] [EC:2.3.2.26]
113571705  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
113572476  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
113572567  [KO:K03871]
113572720  prkn; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
113572783  anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
113572866  socs1; suppressor of cytokine signaling 1 [KO:K04694]
113573096  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
113573285  [KO:K04552] [EC:2.3.2.23]
113573381  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
113573437  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
113573440  [KO:K10577]
113573574  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
113573611  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
113573736  [KO:K10575] [EC:2.3.2.23]
113574085  [KO:K04706] [EC:2.3.2.-]
113574196  skp2; S-phase kinase-associated protein 2 [KO:K03875]
113574572  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
113574589  [KO:K10595] [EC:2.3.2.26]
113574873  [KO:K10604] [EC:2.3.2.27]
113575152  fzr1; fizzy-related protein homolog [KO:K03364]
113575189  [KO:K04678] [EC:2.3.2.26]
113575315  ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
113575467  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
113575584  [KO:K03362]
113575957  [KO:K03871]
113576082  [KO:K10582] [EC:2.3.2.23]
113576764  map3k1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
113576847  [KO:K10605] [EC:2.3.2.27]
113576879  [KO:K03873]
113577025  ube2d1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
113577030  rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
113577191  cul4a; cullin-4A isoform X1 [KO:K10609]
113577362  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
113577429  rnf7; RING-box protein 2 [KO:K10611]
113577679  [KO:K04696]
113577721  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
113577776  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
113578037  skp1; S-phase kinase-associated protein 1 [KO:K03094]
113578069  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
113578071  eloc; elongin-C isoform X1 [KO:K03872]
113578167  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
113578239  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
113578458  [KO:K10577]
113578484  [KO:K10573] [EC:2.3.2.23]
113578504  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
113578820  [KO:K20217] [EC:2.3.2.23]
113578840  anapc11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
113579100  herc1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
113579398  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
113579403  cul2; cullin-2 [KO:K03870]
113579420  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
113579444  cbl; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
113579451  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
113579696  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
113579947  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
113580002  ubr5; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
113580017  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
113580050  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
113580498  [KO:K07868]
113580511  [KO:K22518] [EC:2.3.2.27]
113580833  [KO:K03873]
113580933  [KO:K04694]
113581154  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
113581292  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
113581349  [KO:K10573] [EC:2.3.2.23]
113581368  [KO:K10573] [EC:2.3.2.23]
113581375  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
113581589  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
113581730  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
113582157  [KO:K06689] [EC:2.3.2.23]
113582219  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
113582353  [KO:K05632] [EC:2.3.2.26]
113582434  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
113582562  [KO:K10582] [EC:2.3.2.23]
113582673  cul4b; cullin-4B [KO:K10609]
113583104  [KO:K16061]
113583267  smurf2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
113583718  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
113583736  [KO:K10577]
113584252  [KO:K10456]
113584271  nedd4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
113584345  [KO:K03347]
113584365  [KO:K10612]
113584578  nedd4l; E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
113584807  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
113584923  ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
113585066  ddb2; DNA damage-binding protein 2 [KO:K10140]
113585072  [KO:K04706] [EC:2.3.2.-]
113585246  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
113585537  [KO:K04554] [EC:2.3.2.23]
113585591  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
113585599  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
113585774  [KO:K04506] [EC:2.3.2.27]
113585847  [KO:K06689] [EC:2.3.2.23]
113585963  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
113586087  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
113586199  [KO:K06689] [EC:2.3.2.23]
113586224  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
113586302  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
113586311  [KO:K10594] [EC:2.3.2.26]
113586473  uba6; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
113586651  [KO:K10099]
113586714  [KO:K02207] [EC:2.3.2.23]
113587113  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
113587605  aire; autoimmune regulator [KO:K10603]
113587619  trip12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
113587752  [KO:K10447]
113587792  [KO:K10581] [EC:2.3.2.24]
113587839  cdc27; cell division cycle protein 27 homolog [KO:K03350]
113587992  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
113588038  ube2u; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K06689] [EC:2.3.2.23]
113588235  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
113588327  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
113588424  [KO:K03364]
113588448  fbxo4; F-box only protein 4 [KO:K10291]
113588844  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
113588879  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
113588935  [KO:K02207] [EC:2.3.2.23]
113588947  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
113589238  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
113589881  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
113590013  det1; DET1 homolog [KO:K10571]
113590090  [KO:K10447]
113590207  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
113590257  birc6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
113590280  cul3; LOW QUALITY PROTEIN: cullin-3 [KO:K03869]
113590295  huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
113590455  cdc23; cell division cycle protein 23 homolog [KO:K03355]
113590474  cdc20; cell division cycle protein 20 homolog [KO:K03363]
113590515  [KO:K03362]
113590572  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
113591025  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
113591112  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
113591824  cdc16; cell division cycle protein 16 homolog [KO:K03353]
113592017  trim37; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
113592334  [KO:K03869]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
eee03050  Proteasome
KO pathway
ko04120   

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