KEGG   PATHWAY: elk00510
Entry
elk00510                    Pathway                                
Name
N-Glycan biosynthesis - Enhydra lutris kenyoni (northern sea otter)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
elk00510  N-Glycan biosynthesis
elk00510

Module
elk_M00072  N-glycosylation by oligosaccharyltransferase [PATH:elk00510]
elk_M00073  N-glycan precursor trimming [PATH:elk00510]
elk_M00075  N-glycan biosynthesis, complex type [PATH:elk00510]
Other DBs
GO: 0006487
Organism
Enhydra lutris kenyoni (northern sea otter) [GN:elk]
Gene
111138897  [KO:K09659]
111138907  [KO:K28202]
111138937  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
111139634  [KO:K00726] [EC:2.4.1.101]
111141394  [KO:K00744] [EC:2.4.1.155]
111141578  [KO:K12667]
111141695  [KO:K00721] [EC:2.4.1.83]
111142256  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
111142978  [KO:K03848] [EC:2.4.1.267]
111143055  [KO:K07441] [EC:2.4.1.141]
111143503  [KO:K01230] [EC:3.2.1.113]
111143515  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
111144512  [KO:K19478]
111145760  [KO:K00902] [EC:2.7.1.108]
111145781  [KO:K23741]
111145782  [KO:K23741]
111145785  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
111145893  [KO:K07252] [EC:3.6.1.43]
111145955  [KO:K09658]
111146253  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
111147119  [KO:K03844] [EC:2.4.1.131]
111147542  [KO:K01230] [EC:3.2.1.113]
111148165  [KO:K01228] [EC:3.2.1.106]
111148294  [KO:K01231] [EC:3.2.1.114]
111148556  [KO:K00778] [EC:2.4.3.1]
111148892  [KO:K00738] [EC:2.4.1.145]
111149140  [KO:K12345] [EC:1.3.1.22 1.3.1.94]
111149570  [KO:K05546] [EC:3.2.1.207]
111149757  [KO:K26502]
111150611  [KO:K03845] [EC:2.4.1.258]
111150946  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
111152536  [KO:K01231] [EC:3.2.1.114]
111152722  [KO:K26502]
111153751  [KO:K01001] [EC:2.7.8.15]
111153869  [KO:K07151] [EC:2.4.99.18]
111153921  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
111154338  [KO:K03849] [EC:2.4.1.265]
111154573  [KO:K12670]
111154597  [KO:K01230] [EC:3.2.1.113]
111155896  [KO:K00738] [EC:2.4.1.145]
111155957  [KO:K00779] [EC:2.4.3.1]
111156001  [KO:K03842] [EC:2.4.1.142]
111156639  [KO:K26501]
111157095  [KO:K11170] [EC:1.1.1.441]
111157563  [KO:K03847] [EC:2.4.1.260]
111157690  [KO:K00737] [EC:2.4.1.144]
111158566  [KO:K00729] [EC:2.4.1.117]
111158856  [KO:K00738] [EC:2.4.1.145]
111159066  [KO:K07151] [EC:2.4.99.18]
111159106  [KO:K12666]
111159793  [KO:K00717] [EC:2.4.1.68]
111160137  [KO:K00736] [EC:2.4.1.143]
111160316  [KO:K09661] [EC:2.4.1.-]
111160849  [KO:K12668]
111160897  [KO:K19478]
111160985  [KO:K07432] [EC:2.4.1.141]
111161353  [KO:K03850] [EC:2.4.1.256]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
elk00051  Fructose and mannose metabolism
elk00511  Other glycan degradation
elk00513  Various types of N-glycan biosynthesis
elk00515  Mannose type O-glycan biosynthesis
elk00520  Amino sugar and nucleotide sugar metabolism
elk00533  Glycosaminoglycan biosynthesis - keratan sulfate
elk00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
elk00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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