KEGG   PATHWAY: gvr00510
Entry
gvr00510                    Pathway                                
Name
N-Glycan biosynthesis - Galeopterus variegatus (Sunda flying lemur)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
gvr00510  N-Glycan biosynthesis
gvr00510

Module
gvr_M00072  N-glycosylation by oligosaccharyltransferase [PATH:gvr00510]
gvr_M00073  N-glycan precursor trimming [PATH:gvr00510]
gvr_M00075  N-glycan biosynthesis, complex type [PATH:gvr00510]
Other DBs
GO: 0006487
Organism
Galeopterus variegatus (Sunda flying lemur) [GN:gvr]
Gene
103583574  MAN2A2; alpha-mannosidase 2x isoform X1 [KO:K01231] [EC:3.2.1.114]
103584203  RPN1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
103584984  ALG11; GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [KO:K03844] [EC:2.4.1.131]
103585056  DPM1; dolichol-phosphate mannosyltransferase subunit 1 isoform X1 [KO:K00721] [EC:2.4.1.83]
103585150  ALG8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X1 [KO:K03849] [EC:2.4.1.265]
103586055  MGAT2; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
103586851  DHRSX; dehydrogenase/reductase SDR family member on chromosome X [KO:K11170] [EC:1.1.1.441]
103587309  ALG2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
103587485  ALG12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1 [KO:K03847] [EC:2.4.1.260]
103587611  ALG1; chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [KO:K03842] [EC:2.4.1.142]
103588643  B4GALT2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103589009  DPM2; dolichol phosphate-mannose biosynthesis regulatory protein [KO:K09658]
103590049  MAN1C1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IC [KO:K01230] [EC:3.2.1.113]
103590307  MGAT1; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1 [KO:K00726] [EC:2.4.1.101]
103590881  STT3B; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
103590936  MGAT4D; glycosyltransferase 54 domain-containing protein [KO:K00738] [EC:2.4.1.145]
103591082  GANAB; neutral alpha-glucosidase AB [KO:K05546] [EC:3.2.1.207]
103591665  TUSC3; tumor suppressor candidate 3 [KO:K19478]
103592608  RPN2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
103593067  ALG6; LOW QUALITY PROTEIN: dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
103593497  MAN1B1; endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
103593708  OSTC; oligosaccharyltransferase complex subunit OSTC isoform X1 [KO:K26501]
103593854  MOGS; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
103593904  ALG3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform X1 [KO:K03845] [EC:2.4.1.258]
103594142  ST6GAL2; beta-galactoside alpha-2,6-sialyltransferase 2 [KO:K00779] [EC:2.4.3.1]
103594403  ALG9; LOW QUALITY PROTEIN: alpha-1,2-mannosyltransferase ALG9 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
103594422  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103594662  DPAGT1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase isoform X1 [KO:K01001] [EC:2.7.8.15]
103594672  ALG13; LOW QUALITY PROTEIN: putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [KO:K07432] [EC:2.4.1.141]
103595918  DOLK; dolichol kinase [KO:K00902] [EC:2.7.1.108]
103595956  DOLPP1; dolichyldiphosphatase 1 isoform X1 [KO:K07252] [EC:3.6.1.43]
103595979  [KO:K07252] [EC:3.6.1.43]
103596194  KRTCAP2; keratinocyte-associated protein 2 isoform X1 [KO:K28202]
103596573  B4GALT3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
103596889  MAN2A1; alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
103597100  MGAT4C; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103597798  SRD5A3; polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
103598645  FUT8; alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
103599183  MAN1A1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
103599291  MGAT3; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [KO:K00737] [EC:2.4.1.144]
103600145  [KO:K00744] [EC:2.4.1.155]
103600672  MGAT4B; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [KO:K00738] [EC:2.4.1.145]
103600947  ALG5; dolichyl-phosphate beta-glucosyltransferase isoform X1 [KO:K00729] [EC:2.4.1.117]
103604025  MGAT4A; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
103604813  TMEM258; transmembrane protein 258 isoform X1 [KO:K26502]
103605475  DAD1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 isoform X1 [KO:K12668]
103606042  DDOST; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
103606508  MGAT5B; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
103606522  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103608374  DPM3; dolichol-phosphate mannosyltransferase subunit 3 isoform X1 [KO:K09659]
103608718  [KO:K03850] [EC:2.4.1.256]
103608912  STT3A; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [KO:K07151] [EC:2.4.99.18]
103609188  ST6GAL1; beta-galactoside alpha-2,6-sialyltransferase 1 isoform X1 [KO:K00778] [EC:2.4.3.1]
103609431  [KO:K07441] [EC:2.4.1.141]
103609949  MAGT1; magnesium transporter protein 1 [KO:K19478]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
gvr00051  Fructose and mannose metabolism
gvr00511  Other glycan degradation
gvr00513  Various types of N-glycan biosynthesis
gvr00515  Mannose type O-glycan biosynthesis
gvr00520  Amino sugar and nucleotide sugar metabolism
gvr00533  Glycosaminoglycan biosynthesis - keratan sulfate
gvr00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
gvr00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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