KEGG   PATHWAY: lav04120
Entry
lav04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Loxodonta africana (African savanna elephant)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lav04120  Ubiquitin mediated proteolysis
lav04120

Other DBs
GO: 0016567
Organism
Loxodonta africana (African savanna elephant) [GN:lav]
Gene
100653763  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
100654071  ANAPC7; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7 [KO:K03354]
100654194  CUL3; cullin-3 isoform X2 [KO:K03869]
100654250  PIAS1; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
100654874  [KO:K04552] [EC:2.3.2.23]
100655010  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
100655059  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100655149  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100655720  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100655831  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
100655998  ELOC; elongin-C [KO:K03872]
100656382  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
100656625  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100656882  CUL4A; cullin-4A isoform X1 [KO:K10609]
100656917  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
100657114  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
100657479  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
100657657  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100657839  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
100658317  NHLRC1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100658327  ELOB; elongin-B isoform X2 [KO:K03873]
100658423  FBXW7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
100658892  CBL; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
100659163  [KO:K16060]
100659188  DDB1; DNA damage-binding protein 1 [KO:K10610]
100659261  FBXO2; F-box only protein 2 [KO:K10099]
100659383  CUL7; cullin-7 isoform X3 [KO:K10613]
100659446  [KO:K16060]
100659781  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
100659806  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
100660117  CDC27; LOW QUALITY PROTEIN: cell division cycle protein 27 homolog [KO:K03350]
100660137  AIRE; autoimmune regulator [KO:K10603]
100660215  CUL4B; cullin-4B isoform X3 [KO:K10609]
100660330  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100660408  CUL5; cullin-5 isoform X1 [KO:K10612]
100660467  FBXO4; F-box only protein 4 [KO:K10291]
100660572  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
100661093  [KO:K10580] [EC:2.3.2.23]
100661424  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
100661741  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
100661816  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
100662056  CUL2; cullin-2 isoform X1 [KO:K03870]
100662128  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
100662208  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
100662373  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X3 [KO:K05633] [EC:2.3.2.26]
100662388  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
100662478  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
100662558  KLHL9; kelch-like protein 9 [KO:K10447]
100662968  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
100662981  HERC2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
100663084  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X5 [KO:K10601] [EC:2.3.2.27]
100663359  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100663419  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
100663426  CDC16; cell division cycle protein 16 homolog [KO:K03353]
100663548  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
100663845  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100663907  PML; protein PML isoform X2 [KO:K10054] [EC:2.3.2.-]
100663909  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
100663986  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
100664110  SOCS1; LOW QUALITY PROTEIN: suppressor of cytokine signaling 1 [KO:K04694]
100664158  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X7 [KO:K13305] [EC:2.3.2.26]
100664253  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100664403  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X2 [KO:K04555] [EC:2.3.2.23]
100664562  RCHY1; LOW QUALITY PROTEIN: RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
100664600  CUL1; cullin-1 [KO:K03347]
100664698  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100664764  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
100665384  PIAS2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
100665417  KLHL13; kelch-like protein 13 isoform X8 [KO:K10447]
100665442  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
100665515  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
100665802  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
100665900  DET1; DET1 homolog isoform X1 [KO:K10571]
100666202  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
100666483  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X2 [KO:K04678] [EC:2.3.2.26]
100666571  UBA1; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100667310  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
100667546  PIAS3; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
100667610  CDC20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
100667991  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
100668029  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
100668100  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
100668375  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
100668834  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
100668945  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X8 [KO:K10594] [EC:2.3.2.26]
100669014  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
100669076  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
100669185  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
100669427  UBB; polyubiquitin-B [KO:K04551]
100669448  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X2 [KO:K06643] [EC:2.3.2.27]
100669493  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
100669603  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
100669780  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
100669781  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
100669809  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100669891  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
100669970  [KO:K20217] [EC:2.3.2.23]
100670291  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
100670330  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
100670672  CDC23; cell division cycle protein 23 homolog [KO:K03355]
100670741  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100670978  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
100671471  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100671509  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100672024  ERCC8; DNA excision repair protein ERCC-8 isoform X2 [KO:K10570]
100672359  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100672609  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
100672701  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100673106  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100673191  UBOX5; RING finger protein 37 isoform X8 [KO:K10600]
100673364  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
100673418  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
100673459  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
100674248  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X2 [KO:K04554] [EC:2.3.2.23]
100674249  UBE2Q2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
100674363  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X20 [KO:K10590] [EC:2.3.2.26]
100674455  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X8 [KO:K10586] [EC:2.3.2.23]
100674515  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100674555  FBXW8; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 8 [KO:K10264]
100674681  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
100674745  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
100674748  UBE2I; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
100674848  ANAPC15; anaphase-promoting complex subunit 15 isoform X2 [KO:K25228]
100675296  [KO:K06689] [EC:2.3.2.23]
100675307  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
100675402  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100675444  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
100676125  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
100676245  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
100676448  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
100676713  [KO:K10580] [EC:2.3.2.23]
100676741  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
100676976  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
100677054  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100677309  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
100677464  [KO:K06689] [EC:2.3.2.23]
100677581  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
100677598  FZR1; fizzy-related protein homolog [KO:K03364]
104846542  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X2 [KO:K10581] [EC:2.3.2.24]
111750613  VHL; LOW QUALITY PROTEIN: von Hippel-Lindau disease tumor suppressor [KO:K03871]
111753143  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
lav03050  Proteasome
KO pathway
ko04120   

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