KEGG   PATHWAY: mrv04120
Entry
mrv04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Mauremys reevesii (Reeves's turtle)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mrv04120  Ubiquitin mediated proteolysis
mrv04120

Other DBs
GO: 0016567
Organism
Mauremys reevesii (Reeves's turtle) [GN:mrv]
Gene
120368857  [KO:K03873]
120369387  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
120369418  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
120369450  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
120369629  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
120369650  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
120370114  [KO:K10260]
120370294  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
120370453  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
120370554  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
120370564  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
120370937  CDC23; cell division cycle protein 23 homolog [KO:K03355]
120371062  CDC20; cell division cycle protein 20 homolog [KO:K03363]
120371363  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
120371433  CUL4B; cullin-4B isoform X1 [KO:K10609]
120371555  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
120371556  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
120371625  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
120371834  CUL3; cullin-3 isoform X1 [KO:K03869]
120372133  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
120372163  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
120372193  AIRE; autoimmune regulator [KO:K10603]
120372264  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
120372466  [KO:K04725] [EC:2.3.2.27]
120372625  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
120372777  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
120372815  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
120372974  DET1; DET1 homolog [KO:K10571]
120373029  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
120373120  [KO:K10054] [EC:2.3.2.-]
120373184  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
120373299  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
120373316  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
120373385  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
120373428  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
120373564  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
120373689  UBE2I; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
120374845  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
120375140  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
120375576  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
120375674  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
120375679  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
120380596  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
120380661  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
120380921  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
120381008  [KO:K03868] [EC:2.3.2.32]
120382836  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
120383248  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
120383349  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
120383421  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
120383770  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
120384243  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
120384308  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
120384735  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
120384740  [KO:K03868] [EC:2.3.2.32]
120385354  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
120385876  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
120385996  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
120386020  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
120386028  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
120386210  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
120386240  UBC; polyubiquitin-C [KO:K08770]
120386330  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
120386611  [KO:K10447]
120386643  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
120386724  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
120386785  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
120387196  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
120387330  UBB; polyubiquitin-B isoform X1 [KO:K08770]
120387333  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
120387813  FBXO2; F-box only protein 2 [KO:K10099]
120387890  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
120387988  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
120388117  CUL4A; cullin-4A [KO:K10609]
120388363  [KO:K04696]
120388505  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
120388601  UBE2S; ubiquitin-conjugating enzyme E2 S isoform X1 [KO:K10583] [EC:2.3.2.23]
120388610  CDC16; cell division cycle protein 16 homolog [KO:K03353]
120388717  SAE1; LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
120388808  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
120390127  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
120390287  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K04707] [EC:2.3.2.27]
120390435  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
120390955  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
120391664  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
120391780  FZR1; fizzy-related protein homolog [KO:K03364]
120391818  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
120391893  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
120392042  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
120392158  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
120392208  UBE2Z; ubiquitin-conjugating enzyme E2 Z isoform X1 [KO:K10585] [EC:2.3.2.23]
120393562  [KO:K04696]
120394323  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
120395278  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
120395448  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
120396623  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
120396698  [KO:K20217] [EC:2.3.2.23]
120396700  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
120397377  CUL2; cullin-2 isoform X1 [KO:K03870]
120397642  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
120397670  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
120397751  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
120397820  CUL1; cullin-1 [KO:K03347]
120397853  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
120398319  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
120398389  ELOC; elongin-C [KO:K03872]
120398587  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
120399610  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
120400709  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
120400795  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
120400929  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
120401314  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
120401698  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
120402332  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
120403276  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
120403354  ELOB; elongin-B [KO:K03873]
120404545  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
120404584  CUL5; cullin-5 isoform X1 [KO:K10612]
120404604  PRPF19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
120404670  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04552] [EC:2.3.2.23]
120405164  DDB1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
120405557  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
120405667  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
120405820  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
120405957  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
120405999  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
120406058  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
120406117  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
120406209  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
120406336  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
120406346  [KO:K07868]
120406593  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
120407716  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
120407790  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
120407913  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
120407926  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
120408172  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
120408279  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
120408460  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
120408990  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
120409067  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
120409210  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
120409237  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
120409383  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
120409492  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mrv03050  Proteasome
KO pathway
ko04120   

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