KEGG   PATHWAY: achl04820
Entry
achl04820                   Pathway                                
Name
Cytoskeleton in muscle cells - Acanthisitta chloris (rifleman)
Class
Cellular Processes; Cell motility
Pathway map
achl04820  Cytoskeleton in muscle cells
achl04820

Organism
Acanthisitta chloris (rifleman) [GN:achl]
Gene
103800569  COL1A2; collagen alpha-2(I) chain [KO:K06236]
103807837  collagen alpha-1(I) chain [KO:K06236]
103804177  COL24A1; LOW QUALITY PROTEIN: collagen alpha-1(XXIV) chain [KO:K19721]
103804748  COL27A1; collagen alpha-1(XXVII) chain [KO:K19721]
103805290  COL5A2; collagen alpha-2(V) chain [KO:K19721]
103799795  COL11A1; collagen alpha-1(XI) chain [KO:K19721]
103803097  LOW QUALITY PROTEIN: collagen alpha-1(V) chain-like [KO:K19721]
103797199  COL9A3; collagen alpha-3(IX) chain [KO:K08131]
103811254  COL9A1; collagen alpha-1(IX) chain [KO:K08131]
103811901  COL9A2; LOW QUALITY PROTEIN: collagen alpha-2(IX) chain [KO:K08131]
103804442  DCN; decorin [KO:K04660]
103797681  LOW QUALITY PROTEIN: versican core protein-like [KO:K06793]
103804323  COL6A3; collagen alpha-3(VI) chain [KO:K06238]
103806073  COL6A1; LOW QUALITY PROTEIN: collagen alpha-1(VI) chain [KO:K06238]
103806074  COL6A2; collagen alpha-2(VI) chain [KO:K06238]
103808322  THBS1; thrombospondin-1 [KO:K16857]
103797742  COMP; cartilage oligomeric matrix protein [KO:K04659]
103798285  THBS4; LOW QUALITY PROTEIN: thrombospondin-4 [KO:K04659]
103799103  THBS2; thrombospondin-2 [KO:K04659]
103803203  THBS3; thrombospondin-3 [KO:K04659]
103797870  FBN1; fibrillin-1 [KO:K06825]
103811288  LOW QUALITY PROTEIN: fibrillin-2-like [KO:K23342]
103807501  fibrillin-2 [KO:K23342]
103797759  LOW QUALITY PROTEIN: collagen alpha-2(IV) chain-like [KO:K06237]
103797935  COL4A6; LOW QUALITY PROTEIN: collagen alpha-6(IV) chain [KO:K06237]
103810661  COL4A5; collagen alpha-5(IV) chain [KO:K06237]
103811200  COL4A1; collagen alpha-1(IV) chain [KO:K06237]
103812170  collagen alpha-3(IV) chain-like [KO:K06237]
103804850  FBLN2; fibulin-2 [KO:K17307]
103801493  FBLN1; fibulin-1 [KO:K17307]
103804531  NID2; LOW QUALITY PROTEIN: nidogen-2 [KO:K06826]
103810608  FN1; fibronectin [KO:K05717]
103810154  SDC1; syndecan-1 [KO:K06257]
103798352  SDC2; syndecan-2 [KO:K16336]
103800135  SDC3; syndecan-3 [KO:K16337]
103803393  SDC4; syndecan-4 [KO:K16338]
103811278  AGRN; agrin [KO:K06254]
103803513  DSG2; LOW QUALITY PROTEIN: desmoglein-2 [KO:K07597]
103808469  PKP2; plakophilin-2 [KO:K12642]
103808870  JUP; LOW QUALITY PROTEIN: junction plakoglobin [KO:K10056]
103808674  DSP; desmoplakin [KO:K10381]
103807920  VIM; vimentin [KO:K07606]
103797561  DES; LOW QUALITY PROTEIN: desmin [KO:K07610]
103800515  LAMA2; laminin subunit alpha-2 [KO:K05637]
103801527  LAMA1; LOW QUALITY PROTEIN: laminin subunit alpha-1 [KO:K05637]
103799521  ITGA1; integrin alpha-1 [KO:K06480]
103802387  ITGA2; integrin alpha-2 [KO:K06481]
103805888  ITGA4; integrin alpha-4 [KO:K06483]
103799794  ITGA6; integrin alpha-6 [KO:K06485]
103800118  ITGA8; integrin alpha-8 [KO:K06584]
103800700  ITGA9; integrin alpha-9 [KO:K06585]
103811776  ITGA11; integrin alpha-11 [KO:K06587]
103804211  ITGAV; integrin alpha-V [KO:K06487]
103802727  ITGB1; integrin beta-1 [KO:K05719]
103806183  ITGB3; integrin beta-3 [KO:K06493]
103801101  ITGB4; integrin beta-4 [KO:K06525]
103798573  ITGB5; integrin beta-5 [KO:K06588]
103800426  ITGB6; integrin beta-6 [KO:K06589]
103805812  ITGB8; integrin beta-8 [KO:K06591]
103798890  TLN1; talin-1 [KO:K06271]
103800892  VCL; vinculin [KO:K05700]
103811679  ACTN2; alpha-actinin-2 [KO:K21073]
103806004  actin, cytoplasmic 1 isoform X1 [KO:K05692]
103806317  actin, alpha skeletal muscle-like [KO:K05692]
103803570  actin, gamma-enteric smooth muscle [KO:K12315]
103802037  DAG1; dystroglycan [KO:K06265]
103802053  alpha-sarcoglycan-like [KO:K12565]
103804093  SGCE; LOW QUALITY PROTEIN: epsilon-sarcoglycan [KO:K27061]
103805148  SGCB; beta-sarcoglycan [KO:K12566]
103800571  SGCG; gamma-sarcoglycan [KO:K12564]
103800133  SSPN; LOW QUALITY PROTEIN: sarcospan [KO:K22194]
103798201  dystrophin-like [KO:K10366]
103808549  SNTB2; beta-2-syntrophin [KO:K24064]
103812128  DTNA; dystrobrevin alpha isoform X1 [KO:K26998]
103799318  sodium/potassium-transporting ATPase subunit alpha-1 [KO:K01539] [EC:7.2.2.13]
103799630  ATP1B4; protein ATP1B4 [KO:K01540]
103803047  ATP1B3; sodium/potassium-transporting ATPase subunit beta-3 [KO:K01540]
103803409  ATP1B1; sodium/potassium-transporting ATPase subunit beta-1 [KO:K01540]
103800701  ANK3; ankyrin-3 [KO:K09259]
103804675  SPTAN1; spectrin alpha chain, non-erythrocytic 1 [KO:K06114]
103800854  LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 5-like [KO:K06115]
103808490  SPTBN1; spectrin beta chain, non-erythrocytic 1 isoform X1 [KO:K06115]
103803719  CSRP3; cysteine and glycine-rich protein 3 [KO:K09377]
103811765  CSRP2; cysteine and glycine-rich protein 2 isoform X1 [KO:K09377]
103812166  myosin-3-like [KO:K24220]
103806677  myosin-6-like [KO:K24220]
103801354  myosin heavy chain, skeletal muscle, adult [KO:K24220]
103801484  MYH7B; myosin-7B [KO:K24220]
103799095  myosin-6 [KO:K17751]
103800317  myosin-7 [KO:K17751]
103803830  MYH10; myosin-10 [KO:K10352]
103812187  myosin-9 [KO:K10352]
103808024  MYH11; myosin-11 isoform X1 [KO:K10352]
103804788  MYL1; myosin light chain 1/3, skeletal muscle isoform isoform X1 [KO:K05738]
103801019  myosin light chain 1, cardiac muscle [KO:K12749]
103807735  myosin light chain, embryonic-like [KO:K12750]
103805085  MYL2; myosin regulatory light chain 2, ventricular/cardiac muscle isoform [KO:K10351]
103800827  myosin regulatory light polypeptide 9 isoform X1 [KO:K12755]
103811465  MYBPC1; myosin-binding protein C, slow-type [KO:K12557]
103797595  MYBPC3; myosin-binding protein C, cardiac-type [KO:K12568]
103805610  MYBPH; myosin-binding protein H [KO:K24494]
103803331  ACTA1; actin, alpha skeletal muscle [KO:K10354]
103798007  actin, alpha cardiac muscle 1 [KO:K12314]
103807362  TNNC1; troponin C, slow skeletal and cardiac muscles [KO:K05865]
103809115  TNNI1; troponin I, slow skeletal muscle [KO:K10371]
103807658  TNNC2; troponin C, skeletal muscle [KO:K12042]
103801086  TNNT3; troponin T, fast skeletal muscle [KO:K12046]
103798230  TNNT2; troponin T, cardiac muscle [KO:K12045]
103797610  tropomyosin alpha-3 chain-like [KO:K10373]
103811390  tropomyosin alpha-4 chain [KO:K10374]
103806137  TPM3; tropomyosin alpha-3 chain isoform X1 [KO:K09290]
103811008  LOW QUALITY PROTEIN: tropomyosin alpha-1 chain-like [KO:K10375]
103811397  TTN; titin [KO:K12567] [EC:2.7.11.1]
103805046  MYOT; myotilin [KO:K19875]
103803872  SYNPO2; synaptopodin-2 [KO:K24066]
103810960  NEBL; LOW QUALITY PROTEIN: nebulette [KO:K25865]
103803855  MYOZ2; myozenin-2 isoform X1 [KO:K26050]
103806403  MYOZ3; myozenin-3 [KO:K26050]
103808018  MYOZ1; myozenin-1 isoform X1 [KO:K26050]
103801575  PDLIM4; PDZ and LIM domain protein 4 [KO:K23353]
103802384  PDLIM1; PDZ and LIM domain protein 1 [KO:K23353]
103803206  PDLIM3; PDZ and LIM domain protein 3 isoform X1 [KO:K23353]
103806294  CAPZA2; F-actin-capping protein subunit alpha-2 [KO:K10364]
103801938  CAPZA1; F-actin-capping protein subunit alpha-1 [KO:K10364]
103807136  CAPZB; F-actin-capping protein subunit beta [KO:K10365]
103805704  xin actin-binding repeat-containing protein 1-like [KO:K27381]
103808133  NRAP; nebulin-related-anchoring protein [KO:K24421]
103802173  MYPN; myopalladin [KO:K22028]
103804175  PDLIM7; PDZ and LIM domain protein 7 [KO:K19867]
103804541  LDB3; LIM domain-binding protein 3 [KO:K19867]
103811986  LOW QUALITY PROTEIN: PDZ and LIM domain protein 7-like [KO:K19867]
103799410  tropomodulin-4-like [KO:K10370]
103806319  TMOD3; tropomodulin-3 [KO:K10370]
103800846  TMOD2; tropomodulin-2 isoform X1 [KO:K10370]
103807947  TMOD1; tropomodulin-1 [KO:K10370]
103799241  ZYX; zyxin [KO:K06273]
103803052  FHL1; four and a half LIM domains protein 1 isoform X1 [KO:K14365]
103802406  FHL2; four and a half LIM domains protein 2 [KO:K14380]
103808959  FHL3; four and a half LIM domains protein 3 [KO:K24414]
103810552  LMOD3; leiomodin-3 [KO:K22030]
103801961  LMOD1; leiomodin-1 [KO:K22030]
103802120  LMOD2; leiomodin-2 [KO:K22030]
103800622  ANKRD1; ankyrin repeat domain-containing protein 1 [KO:K21433]
103807139  ANKRD2; LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 2 [KO:K21434]
103807330  FMNL2; formin-like protein 2 [KO:K23957]
103797614  DAAM2; disheveled-associated activator of morphogenesis 2 [KO:K04512]
103811185  DAAM1; disheveled-associated activator of morphogenesis 1 [KO:K04512]
103808717  DIAPH2; protein diaphanous homolog 2 [KO:K05741]
103809351  FMN2; formin-2 [KO:K02184]
103810090  MYOM3; myomesin-3 [KO:K24495]
103802623  MYOM1; myomesin-1 [KO:K24495]
103808728  MYOM2; myomesin-2 [KO:K24495]
103797035  ENO2; gamma-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
103806327  alpha-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
103797242  ANK2; LOW QUALITY PROTEIN: ankyrin-2 [KO:K09255]
103811729  TRIM55; tripartite motif-containing protein 55 [KO:K10654]
103809639  TRIM63; E3 ubiquitin-protein ligase TRIM63 [KO:K10655] [EC:2.3.2.27]
103811224  AMPD1; AMP deaminase 1 [KO:K01490] [EC:3.5.4.6]
103799269  AMPD3; AMP deaminase 3 [KO:K01490] [EC:3.5.4.6]
103811727  OBSCN; obscurin [KO:K17531] [EC:2.7.11.1]
103801729  CAPN3; calpain-3 [KO:K08573] [EC:3.4.22.54]
103807017  SYNE3; nesprin-3 [KO:K21761]
103797685  SUN1; SUN domain-containing protein 1 [KO:K19347]
103803437  SUN2; SUN domain-containing protein 2 [KO:K19347]
103808057  TMEM43; transmembrane protein 43 [KO:K27488]
103805830  LBR; lamin-B receptor [KO:K19532] [EC:1.3.1.70]
103801075  LMNB2; lamin-B2 [KO:K07611]
103806880  lamin-L(III)-like [KO:K07611]
Reference
PMID:12142273
  Authors
Clark KA, McElhinny AS, Beckerle MC, Gregorio CC
  Title
Striated muscle cytoarchitecture: an intricate web of form and function.
  Journal
Annu Rev Cell Dev Biol 18:637-706 (2002)
DOI:10.1146/annurev.cellbio.18.012502.105840
Reference
PMID:31407867
  Authors
Mukund K, Subramaniam S
  Title
Skeletal muscle: A review of molecular structure and function, in health and disease.
  Journal
Wiley Interdiscip Rev Syst Biol Med 12:e1462 (2020)
DOI:10.1002/wsbm.1462
Reference
PMID:24481844
  Authors
Stroud MJ, Banerjee I, Veevers J, Chen J
  Title
Linker of nucleoskeleton and cytoskeleton complex proteins in cardiac structure, function, and disease.
  Journal
Circ Res 114:538-48 (2014)
DOI:10.1161/CIRCRESAHA.114.301236
Reference
PMID:28640448
  Authors
Henderson CA, Gomez CG, Novak SM, Mi-Mi L, Gregorio CC
  Title
Overview of the Muscle Cytoskeleton.
  Journal
Compr Physiol 7:891-944 (2017)
DOI:10.1002/cphy.c160033
Reference
PMID:32265741
  Authors
Csapo R, Gumpenberger M, Wessner B
  Title
Skeletal Muscle Extracellular Matrix - What Do We Know About Its Composition, Regulation, and Physiological Roles? A Narrative Review.
  Journal
Front Physiol 11:253 (2020)
DOI:10.3389/fphys.2020.00253
Reference
PMID:27114860
  Authors
Pinch M, Guth R, Samanta MP, Chaidez A, Unguez GA
  Title
The myogenic electric organ of Sternopygus macrurus: a non-contractile tissue with a skeletal muscle transcriptome.
  Journal
PeerJ 4:e1828 (2016)
DOI:10.7717/peerj.1828
Reference
PMID:23860255
  Authors
Sequeira V, Nijenkamp LL, Regan JA, van der Velden J
  Title
The physiological role of cardiac cytoskeleton and its alterations in heart failure.
  Journal
Biochim Biophys Acta 1838:700-22 (2014)
DOI:10.1016/j.bbamem.2013.07.011
Reference
PMID:36960155
  Authors
Zhang B, Powers JD, McCulloch AD, Chi NC
  Title
Nuclear mechanosignaling in striated muscle diseases.
  Journal
Front Physiol 14:1126111 (2023)
DOI:10.3389/fphys.2023.1126111
Reference
PMID:21464301
  Authors
Al-Amoudi A, Castano-Diez D, Devos DP, Russell RB, Johnson GT, Frangakis AS
  Title
The three-dimensional molecular structure of the desmosomal plaque.
  Journal
Proc Natl Acad Sci U S A 108:6480-5 (2011)
DOI:10.1073/pnas.1019469108
Reference
PMID:33067392
  Authors
Sikora M, Ermel UH, Seybold A, Kunz M, Calloni G, Reitz J, Vabulas RM, Hummer G, Frangakis AS
  Title
Desmosome architecture derived from molecular dynamics simulations and cryo-electron tomography.
  Journal
Proc Natl Acad Sci U S A 117:27132-27140 (2020)
DOI:10.1073/pnas.2004563117
Reference
PMID:26910421
  Authors
Xu XP, Kim E, Swift M, Smith JW, Volkmann N, Hanein D
  Title
Three-Dimensional Structures of Full-Length, Membrane-Embedded Human alpha(IIb)beta(3) Integrin Complexes.
  Journal
Biophys J 110:798-809 (2016)
DOI:10.1016/j.bpj.2016.01.016
Reference
PMID:22945352
  Authors
Wang W, Shi Z, Jiao S, Chen C, Wang H, Liu G, Wang Q, Zhao Y, Greene MI, Zhou Z
  Title
Structural insights into SUN-KASH complexes across the nuclear envelope.
  Journal
Cell Res 22:1440-52 (2012)
DOI:10.1038/cr.2012.126
Reference
PMID:23597672
  Authors
Sosa BA, Kutay U, Schwartz TU
  Title
Structural insights into LINC complexes.
  Journal
Curr Opin Struct Biol 23:285-91 (2013)
DOI:10.1016/j.sbi.2013.03.005
Reference
PMID:33058875
  Authors
Cruz VE, Esra Demircioglu F, Schwartz TU
  Title
Structural Analysis of Different LINC Complexes Reveals Distinct Binding Modes.
  Journal
J Mol Biol 432:6028-6041 (2020)
DOI:10.1016/j.jmb.2020.09.019
Reference
PMID:36523505
  Authors
Schuler SC, Liu Y, Dumontier S, Grandbois M, Le Moal E, Cornelison D, Bentzinger CF
  Title
Extracellular matrix: Brick and mortar in the skeletal muscle stem cell niche.
  Journal
Front Cell Dev Biol 10:1056523 (2022)
DOI:10.3389/fcell.2022.1056523
Reference
PMID:30425656
  Authors
Brull A, Morales Rodriguez B, Bonne G, Muchir A, Bertrand AT
  Title
The Pathogenesis and Therapies of Striated Muscle Laminopathies.
  Journal
Front Physiol 9:1533 (2018)
DOI:10.3389/fphys.2018.01533
Reference
PMID:36552829
  Authors
Storey EC, Fuller HR
  Title
Genotype-Phenotype Correlations in Human Diseases Caused by Mutations of LINC Complex-Associated Genes: A Systematic Review and Meta-Summary.
  Journal
Cells 11:cells11244065 (2022)
DOI:10.3390/cells11244065
Related
pathway
achl04512  ECM-receptor interaction
achl04814  Motor proteins
KO pathway
ko04820   
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