KEGG   PATHWAY: esp04141
Entry
esp04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Etheostoma spectabile (orangethroat darter)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
esp04141  Protein processing in endoplasmic reticulum
esp04141

Other DBs
GO: 0030433 0034976
Organism
Etheostoma spectabile (orangethroat darter) [GN:esp]
Gene
116669438  sec24d; protein transport protein Sec24D [KO:K14007]
116669923  [KO:K01367] [EC:3.4.22.52]
116669993  [KO:K09525]
116670148  [KO:K11718] [EC:2.4.1.-]
116670290  hspa4l; heat shock 70 kDa protein 4L [KO:K09485]
116670384  [KO:K09525]
116670418  [KO:K14020]
116670427  [KO:K11863] [EC:3.4.22.-]
116670744  [KO:K14005]
116670776  dnajb12; dnaJ homolog subfamily B member 12 isoform X1 [KO:K09518]
116670798  sar1a; GTP-binding protein SAR1a [KO:K07953] [EC:3.6.5.-]
116671008  nploc4; nuclear protein localization protein 4 homolog [KO:K14015]
116671212  [KO:K09561] [EC:2.3.2.27]
116671539  [KO:K04440] [EC:2.7.11.24]
116671549  [KO:K06689] [EC:2.3.2.23]
116671719  sec24c; LOW QUALITY PROTEIN: protein transport protein Sec24C [KO:K14007]
116671951  mbtps2; membrane-bound transcription factor site-2 protease [KO:K07765] [EC:3.4.24.85]
116671995  pdia4; protein disulfide-isomerase A4 isoform X1 [KO:K09582] [EC:5.3.4.1]
116672051  sec61g; protein transport protein Sec61 subunit gamma [KO:K07342]
116672183  txndc5; thioredoxin domain-containing protein 5 [KO:K13984] [EC:5.3.4.1]
116672286  tram1; translocating chain-associated membrane protein 1 [KO:K14010]
116672394  marchf6; E3 ubiquitin-protein ligase MARCH6 isoform X1 [KO:K10661] [EC:2.3.2.27]
116673183  ckap4; cytoskeleton-associated protein 4 [KO:K13999]
116673713  cryaa; alpha-crystallin A chain [KO:K09541]
116674431  [KO:K26502]
116675297  [KO:K02159]
116678166  dnajc1; dnaJ homolog subfamily C member 1 isoform X1 [KO:K09521]
116678739  ssr3; translocon-associated protein subunit gamma [KO:K13251]
116678887  [KO:K09525]
116679238  cul1; cullin-1 [KO:K03347]
116679545  [KO:K06689] [EC:2.3.2.23]
116683326  [KO:K02159]
116683360  ubxn4; UBX domain-containing protein 4 isoform X1 [KO:K24348]
116685430  [KO:K10085]
116685712  magt1; magnesium transporter protein 1 [KO:K19478]
116685937  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
116685966  [KO:K06689] [EC:2.3.2.23]
116686021  [KO:K02159]
116686036  ostc; oligosaccharyltransferase complex subunit OSTC [KO:K26501]
116686079  [KO:K06689] [EC:2.3.2.23]
116686434  [KO:K14003]
116686578  plaa; phospholipase A-2-activating protein [KO:K14018]
116686663  [KO:K10575] [EC:2.3.2.23]
116686794  selenos; selenoprotein S [KO:K14025]
116686931  [KO:K23741]
116686948  eif2ak3; eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
116687128  ero1a; ERO1-like protein alpha [KO:K10950] [EC:1.8.4.-]
116687208  ube2j2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
116687277  ddit3; DNA damage-inducible transcript 3 protein [KO:K04452]
116687722  edem1; ER degradation-enhancing alpha-mannosidase-like protein 1 [KO:K10084]
116687768  ssr1; translocon-associated protein subunit alpha [KO:K13249]
116687808  sec13; protein SEC13 homolog [KO:K14004]
116687894  [KO:K10956]
116687901  rpn1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
116688210  [KO:K10099]
116688299  yod1; ubiquitin thioesterase OTU1 [KO:K13719] [EC:3.1.2.-]
116688321  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
116688369  os9; protein OS-9 isoform X1 [KO:K10088]
116688386  [KO:K10956]
116688904  ubqln1; ubiquilin-1 isoform X1 [KO:K04523]
116688988  dnajb11; dnaJ homolog subfamily B member 11 [KO:K09517]
116689180  [KO:K13989]
116689243  vcp; transitional endoplasmic reticulum ATPase [KO:K13525]
116689290  [KO:K06689] [EC:2.3.2.23]
116689307  [KO:K10575] [EC:2.3.2.23]
116689352  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
116689397  [KO:K14007]
116689744  ufd1; ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1 [KO:K14016]
116690145  [KO:K03173] [EC:2.3.2.27]
116690292  xbp1; LOW QUALITY PROTEIN: X-box-binding protein 1 [KO:K09027]
116690444  [KO:K04426] [EC:2.7.11.25]
116690453  man1c1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IC isoform X1 [KO:K01230] [EC:3.2.1.113]
116690522  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
116690588  derl1; derlin-1 [KO:K11519]
116690988  sec61b; protein transport protein Sec61 subunit beta [KO:K09481]
116691017  [KO:K03283]
116691073  hspb6; heat shock protein beta-6 [KO:K09542]
116691176  [KO:K04523]
116692091  [KO:K09525]
116692164  [KO:K10100]
116692345  ssr4; translocon-associated protein subunit delta [KO:K04571]
116692368  [KO:K05638]
116692584  [KO:K10636] [EC:2.3.2.36]
116692611  nsfl1c; NSFL1 cofactor p47 [KO:K14012]
116692692  [KO:K14010]
116692819  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
116692861  [KO:K03283]
116692982  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
116693033  [KO:K09049]
116693094  dnaja2; dnaJ homolog subfamily A member 2 [KO:K09503]
116693396  ngly1; peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase isoform X1 [KO:K01456] [EC:3.5.1.52]
116693577  pdia3; protein disulfide-isomerase A3 [KO:K08056] [EC:5.3.4.1]
116693896  svip; small VCP/p97-interacting protein [KO:K14014]
116693958  [KO:K14027]
116694244  [KO:K09503]
116694365  bcap29; B-cell receptor-associated protein 29 [KO:K28771]
116694373  tmem258; transmembrane protein 258 [KO:K26502]
116694408  mbtps1; membrane-bound transcription factor site-1 protease [KO:K08653] [EC:3.4.21.112]
116694661  hsp90b1; endoplasmin [KO:K09487]
116694902  [KO:K10086]
116695119  [KO:K10839]
116695809  [KO:K08057]
116695827  [KO:K08057]
116696100  ubxn6; UBX domain-containing protein 6 isoform X1 [KO:K14011]
116696248  [KO:K09054]
116696549  lman2; vesicular integral-membrane protein VIP36 isoform X1 [KO:K10082]
116696578  [KO:K14007]
116696817  wfs1; wolframin [KO:K14020]
116696962  ganab; neutral alpha-glucosidase AB isoform X1 [KO:K05546] [EC:3.2.1.207]
116696964  ubxn1; UBX domain-containing protein 1 [KO:K24348]
116697091  sil1; LOW QUALITY PROTEIN: nucleotide exchange factor SIL1 [KO:K14001]
116697416  [KO:K04440] [EC:2.7.11.24]
116697701  dnajb2; dnaJ homolog subfamily B member 2 isoform X1 [KO:K09508]
116697907  dnajc10; dnaJ homolog subfamily C member 10 [KO:K09530] [EC:1.8.4.-]
116697913  dnajc3; dnaJ homolog subfamily C member 3 [KO:K09523]
116697955  nfe2l2; nuclear factor erythroid 2-related factor 2 [KO:K05638]
116698080  [KO:K09523]
116698399  uggt2; LOW QUALITY PROTEIN: UDP-glucose:glycoprotein glucosyltransferase 2 [KO:K11718] [EC:2.4.1.-]
116698489  [KO:K19478]
116698535  bag1; BAG family molecular chaperone regulator 1 [KO:K09555]
116698613  [KO:K08057]
116698650  [KO:K10661] [EC:2.3.2.27]
116698657  [KO:K02161]
116698716  sec62; translocation protein SEC62 [KO:K12275]
116699434  [KO:K14003]
116699459  [KO:K09502]
116699558  dad1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
116700045  [KO:K09542]
116700125  hyou1; hypoxia up-regulated protein 1 isoform X1 [KO:K09486]
116700131  [KO:K10661] [EC:2.3.2.27]
116700138  [KO:K03283]
116700182  skp1; LOW QUALITY PROTEIN: S-phase kinase-associated protein 1 [KO:K03094]
116700244  [KO:K09507]
116700298  [KO:K13525]
116700381  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
116700740  sec24a; protein transport protein Sec24A isoform X1 [KO:K14007]
116700744  sar1b; GTP-binding protein SAR1b [KO:K07953] [EC:3.6.5.-]
116700966  atf4; cyclic AMP-dependent transcription factor ATF-4 isoform X1 [KO:K04374]
116700985  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
116701208  [KO:K14006]
116701239  [KO:K04523]
116701725  stt3b; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
116701780  rnf5; E3 ubiquitin-protein ligase RNF5 [KO:K10666] [EC:2.3.2.27]
116702113  ssr2; translocon-associated protein subunit beta [KO:K13250]
116702656  p4hb; protein disulfide-isomerase [KO:K09580] [EC:5.3.4.1]
116702801  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
116702919  prkcsh; glucosidase 2 subunit beta [KO:K08288]
116702985  [KO:K03283]
116702994  [KO:K09561] [EC:2.3.2.27]
116703172  [KO:K10839]
116703270  bax; apoptosis regulator BAX [KO:K02159]
116703331  [KO:K02159]
116703426  ern1; serine/threonine-protein kinase/endoribonuclease IRE1 isoform X1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
116703688  [KO:K09507]
116703724  [KO:K08852] [EC:2.7.11.1 3.1.26.-]
116703759  hspbp1; hsp70-binding protein 1 [KO:K09562]
116703876  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
116703931  [KO:K10086]
116703984  [KO:K03173] [EC:2.3.2.27]
116703990  sec31a; protein transport protein Sec31A isoform X1 [KO:K14005]
116704162  derl2; derlin-2 [KO:K13989]
116704362  hspa5; endoplasmic reticulum chaperone BiP isoform X1 [KO:K09490] [EC:5.6.1.10]
116704371  lman1; protein ERGIC-53 [KO:K10080]
116704433  mogs; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
116704455  rad23b; UV excision repair protein RAD23 homolog B [KO:K10839]
116704554  [KO:K10575] [EC:2.3.2.23]
116704577  [KO:K03173] [EC:2.3.2.27]
116704627  [KO:K06689] [EC:2.3.2.23]
116704761  [KO:K23741]
116704838  [KO:K01367] [EC:3.4.22.52]
116704839  [KO:K03853] [EC:3.4.22.53]
116704901  erlec1; endoplasmic reticulum lectin 1 [KO:K14008]
116704988  [KO:K07953] [EC:3.6.5.-]
116705343  bag2; BAG family molecular chaperone regulator 2 [KO:K09556]
116705432  [KO:K04440] [EC:2.7.11.24]
116705474  [KO:K09518]
116705504  [KO:K06689] [EC:2.3.2.23]
116705548  map2k7; dual specificity mitogen-activated protein kinase kinase 7 isoform X1 [KO:K04431] [EC:2.7.12.2]
116705705  rrbp1; ribosome-binding protein 1 isoform X1 [KO:K14000]
116705903  sel1l; protein sel-1 homolog 1 [KO:K14026]
116706045  eif2s1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
116706200  dnajc5g; dnaJ homolog subfamily C member 5G isoform X1 [KO:K09525]
116706290  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
116706355  pdia6; protein disulfide-isomerase A6 isoform X1 [KO:K09584] [EC:5.3.4.1]
116706465  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
116706609  ubxn2a; UBX domain-containing protein 2A isoform X1 [KO:K24349]
116706618  sec63; translocation protein SEC63 homolog [KO:K09540]
116706735  hsp90aa1; heat shock protein HSP 90-alpha isoform X1 [KO:K04079]
116706745  map3k5; mitogen-activated protein kinase kinase kinase 5 isoform X1 [KO:K04426] [EC:2.7.11.25]
116706893  [KO:K09523]
116706951  capn1; calpain-1 catalytic subunit isoform X1 [KO:K01367] [EC:3.4.22.52]
116706973  [KO:K10636] [EC:2.3.2.36]
116707280  [KO:K08288]
Compound
C00076  Calcium cation
G00009  
G00010  
G00011  
G00012  
G10694  
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
esp00510  N-Glycan biosynthesis
esp03050  Proteasome
esp03060  Protein export
esp04210  Apoptosis
KO pathway
ko04141   

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