KEGG   PATHWAY: lav05322
Entry
lav05322                    Pathway                                
Name
Systemic lupus erythematosus - Loxodonta africana (African savanna elephant)
Description
Systemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and certain cytoplasmic components, in association with a diverse array of clinical manifestations. The primary pathological findings in patients with SLE are those of inflammation, vasculitis, immune complex deposition, and vasculopathy. Immune complexes comprising autoantibody and self-antigen is deposited particulary in the renal glomeruli and mediate a systemic inflammatory response by activating complement or via Fc{gamma}R-mediated neutrophil and macrophage activation. Activation of complement (C5) leads to injury both through formation of the membrane attack complex (C5b-9) or by generation of the anaphylatoxin and cell activator C5a. Neutrophils and macrophages cause tissue injury by the release of oxidants and proteases.
Class
Human Diseases; Immune disease
Pathway map
lav05322  Systemic lupus erythematosus
lav05322

Organism
Loxodonta africana (African savanna elephant) [GN:lav]
Gene
100664959  C1QA; complement C1q subcomponent subunit A isoform X1 [KO:K03986]
100663347  C1QB; complement C1q subcomponent subunit B [KO:K03987]
100663063  C1QC; complement C1q subcomponent subunit C [KO:K03988]
100668309  C2; complement C2 [KO:K01332] [EC:3.4.21.43]
100667171  C4A; complement C4-A [KO:K03989]
111752374  histone H2A type 1-D [KO:K11251]
100666599  core histone macro-H2A.1 isoform X1 [KO:K11251]
100676393  histone H2A.J [KO:K11251]
100669940  core histone macro-H2A.2 [KO:K11251]
100656492  histone H2A type 2-B [KO:K11251]
100656778  histone H2A type 2-C [KO:K11251]
100657634  histone H2A type 2-A [KO:K11251]
100658203  histone H2A type 2-A [KO:K11251]
100659990  histone H2A type 1-D-like [KO:K11251]
100667708  histone H2A type 1 [KO:K11251]
100669688  histone H2A type 1-C [KO:K11251]
100671396  histone H2A type 1-D [KO:K11251]
100674832  histone H2A type 1-H-like [KO:K11251]
100675681  histone H2A type 1-A isoform X2 [KO:K11251]
100653969  histone H2A-beta, sperm-like [KO:K11251]
100670379  histone H2A type 3-like [KO:K11251]
100670474  histone H2A-Bbd type 2/3-like [KO:K11251]
100659586  histone H2A-Bbd type 1 [KO:K11251]
100662424  histone H2A type 1-J [KO:K11251]
100655117  histone H2A type 1-D [KO:K11251]
100655685  histone H2A type 1 [KO:K11251]
100673728  histone H2A type 1 [KO:K11251]
100659941  histone H2A.V [KO:K11251]
100661296  histone H2A type 1-D [KO:K11251]
100662984  histone H2A type 1 [KO:K11251]
111748619  histone H2A-Bbd type 1-like [KO:K11251]
100671226  histone H2A type 3 [KO:K11251]
100672861  histone H2A type 1-H [KO:K11251]
100666850  histone H2A type 1-B/E [KO:K11251]
100660481  histone H2A.Y [KO:K11251]
100657920  histone H2B type 1-L [KO:K11252]
100675393  histone H2B type 1-B-like [KO:K11252]
100675676  histone H2B type 1-B-like [KO:K11252]
100663722  histone H2B type 1 [KO:K11252]
100667419  histone H2B type 1 [KO:K11252]
100669124  histone H2B type 1-M [KO:K11252]
100669973  histone H2B type 1 [KO:K11252]
100675398  histone H2B type 1-A-like [KO:K11252]
100662145  histone H2B type 1-F/J/L-like [KO:K11252]
100663269  histone H2B type 1 [KO:K11252]
100674008  histone H2B type 1-J [KO:K11252]
100670942  histone H2B type 3-B [KO:K11252]
100661012  histone H2B type 1-H [KO:K11252]
100660148  histone H2B type 1-N [KO:K11252]
100670660  histone H2B type 3-B-like [KO:K11252]
100673143  histone H2B type 1-K [KO:K11252]
100657060  histone H2B type 2-E [KO:K11252]
100658765  histone H2B type 2-F [KO:K11252]
111750617  late histone H2B.L4-like [KO:K11252]
100665018  histone H2B subacrosomal variant-like [KO:K11252]
100675119  histone H2B type 1-A [KO:K11252]
100664570  histone H2B type 1 [KO:K11252]
100667137  histone H2B type 1 [KO:K11252]
100671682  histone H2B type 1-B [KO:K11252]
100668844  histone H2B type 1 [KO:K11252]
111752373  histone H3.1 [KO:K11253]
111752372  histone H3.1 [KO:K11253]
100668564  histone H3.1 [KO:K11253]
100672618  histone H3.3 [KO:K11253]
100666562  uncharacterized protein LOC100666562 [KO:K11253]
100671512  histone H3.1 [KO:K11253]
100654055  histone H3.3 [KO:K11253]
100655399  histone H3.1 [KO:K11253]
100655240  histone H3.3C-like [KO:K11253]
100657350  histone H3 [KO:K11253]
100658484  histone H3 [KO:K11253]
100671112  histone H3.1 [KO:K11253]
100663551  uncharacterized protein LOC100663551 [KO:K11253]
111752375  histone H4 [KO:K11254]
100672832  histone H4 [KO:K11254]
111752376  histone H4 [KO:K11254]
100676110  histone H4 [KO:K11254]
100666280  histone H4 [KO:K11254]
100673434  histone H4 [KO:K11254]
100665424  histone H4 [KO:K11254]
100670545  histone H4 [KO:K11254]
100670616  SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' [KO:K11086]
100665200  SNRPD1; small nuclear ribonucleoprotein Sm D1 [KO:K11087]
111750687  small nuclear ribonucleoprotein Sm D1-like [KO:K11087]
100662794  SNRPD3; small nuclear ribonucleoprotein Sm D3 [KO:K11088]
100660738  GRIN2B; LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2B [KO:K05210]
100670565  E3 ubiquitin-protein ligase TRIM21-like isoform X2 [KO:K10651] [EC:2.3.2.27]
100663011  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM21-like [KO:K10651] [EC:2.3.2.27]
100662450  E3 ubiquitin-protein ligase TRIM21-like [KO:K10651] [EC:2.3.2.27]
100670844  E3 ubiquitin-protein ligase TRIM21-like [KO:K10651] [EC:2.3.2.27]
100670282  E3 ubiquitin-protein ligase TRIM21 [KO:K10651] [EC:2.3.2.27]
100663803  TROVE2; 60 kDa SS-A/Ro ribonucleoprotein isoform X1 [KO:K11089]
100667280  SSB; lupus La protein [KO:K11090]
100661051  ACTN1; alpha-actinin-1 isoform X2 [KO:K05699]
100655307  ACTN4; alpha-actinin-4 [KO:K05699]
100672091  HLA class II histocompatibility antigen, DO alpha chain isoform X1 [KO:K06752]
100672379  HLA class II histocompatibility antigen, DM alpha chain [KO:K06752]
100664409  HLA class II histocompatibility antigen, DQ alpha 2 chain-like [KO:K06752]
100665293  HLA class II histocompatibility antigen, DRB1-4 beta chain-like [KO:K06752]
100662176  HLA class II histocompatibility antigen, DP alpha 1 chain-like isoform X4 [KO:K06752]
100668794  HLA class II histocompatibility antigen, DQ beta 2 chain-like isoform X2 [KO:K06752]
100673529  HLA class II histocompatibility antigen, DO beta chain [KO:K06752]
100675728  DLA class II histocompatibility antigen, DR-1 beta chain-like [KO:K06752]
100669075  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DQ beta 1 chain-like [KO:K06752]
100666146  HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100665860  DLA class II histocompatibility antigen, DR-1 beta chain-like [KO:K06752]
100675445  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100667002  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100664981  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100665266  LOW QUALITY PROTEIN: mamu class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100671834  HLA class II histocompatibility antigen, DP beta 1 chain-like [KO:K06752]
111748122  SLA class II histocompatibility antigen, DQ haplotype C beta chain-like [KO:K06752]
100672669  HLA class II histocompatibility antigen, DM beta chain isoform X1 [KO:K06752]
100674958  mamu class II histocompatibility antigen, DR alpha chain [KO:K06752]
100665550  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
100665834  DLA class II histocompatibility antigen, DR-1 beta chain-like [KO:K06752]
111748125  HLA class II histocompatibility antigen, DP beta 1 chain-like [KO:K06752]
100671798  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DP alpha 1 chain [KO:K06752]
100673824  HLA class II histocompatibility antigen, DQ beta 2 chain-like [KO:K06752]
100659676  DLA class II histocompatibility antigen, DR-1 beta chain-like [KO:K06752]
100676739  uncharacterized protein LOC100676739 [KO:K10785]
111749403  immunoglobulin gamma-1 heavy chain-like [KO:K10785]
100661159  CD80; T-lymphocyte activation antigen CD80 [KO:K05412]
100656594  CD86; T-lymphocyte activation antigen CD86 isoform X1 [KO:K05413]
100661033  CD28; T-cell-specific surface glycoprotein CD28 isoform X1 [KO:K06470]
100659000  CD40LG; CD40 ligand [KO:K03161]
100666178  CD40; tumor necrosis factor receptor superfamily member 5 [KO:K03160]
100677125  TNF; tumor necrosis factor isoform X2 [KO:K03156]
100663285  IFNG; interferon gamma [KO:K04687]
100665398  IL10; interleukin-10 isoform X2 [KO:K05443]
104847364  uncharacterized protein LOC104847364 [KO:K06856]
100658090  C1R; complement C1r subcomponent [KO:K01330] [EC:3.4.21.41]
100676140  C1S; LOW QUALITY PROTEIN: complement C1s subcomponent [KO:K01331] [EC:3.4.21.42]
100657489  C3; complement C3 [KO:K03990]
100676780  C5; LOW QUALITY PROTEIN: complement C5 [KO:K03994]
100668994  C6; complement component C6 [KO:K03995]
100668433  C7; LOW QUALITY PROTEIN: complement component C7 [KO:K03996]
100660679  C8A; complement component C8 alpha chain [KO:K03997]
100670998  C8B; complement component C8 beta chain [KO:K03998]
104847226  C8G; complement component C8 gamma chain [KO:K03999]
100667578  C9; complement component C9 [KO:K04000]
100654642  cathepsin G-like [KO:K01319] [EC:3.4.21.20]
100672001  ELANE; neutrophil elastase [KO:K01327] [EC:3.4.21.37]
100654974  FCGR1A; high affinity immunoglobulin gamma Fc receptor I [KO:K06498]
100654406  FCGR1B; high affinity immunoglobulin gamma Fc receptor IB isoform X1 [KO:K06498]
104846329  FCGR2A; low affinity immunoglobulin gamma Fc region receptor II-a isoform X2 [KO:K06472]
104846346  low affinity immunoglobulin gamma Fc region receptor III-A-like [KO:K06463]
Compound
C00027  Hydrogen peroxide
C00434  Double-stranded DNA
C02737  Phosphatidylserine
Reference
  Authors
Rahman A, Isenberg DA.
  Title
Systemic lupus erythematosus.
  Journal
N Engl J Med 358:929-39 (2008)
DOI:10.1056/NEJMra071297
Reference
  Authors
Mok CC, Lau CS.
  Title
Pathogenesis of systemic lupus erythematosus.
  Journal
J Clin Pathol 56:481-90 (2003)
DOI:10.1136/jcp.56.7.481
Reference
  Authors
Clatworthy MR, Smith KG.
  Title
B cells in glomerulonephritis: focus on lupus nephritis.
  Journal
Semin Immunopathol 29:337-53 (2007)
DOI:10.1007/s00281-007-0092-1
Reference
PMID:8048228
  Authors
Couser WG.
  Title
New insights into mechanisms of immune glomerular injury.
  Journal
West J Med 160:440-6 (1994)
Reference
  Authors
Cook HT, Botto M.
  Title
Mechanisms of Disease: the complement system and the pathogenesis of systemic lupus erythematosus.
  Journal
Nat Clin Pract Rheumatol 2:330-7 (2006)
DOI:10.1038/ncprheum0191
Reference
  Authors
Carroll MC.
  Title
A protective role for innate immunity in systemic lupus erythematosus.
  Journal
Nat Rev Immunol 4:825-31 (2004)
DOI:10.1038/nri1456
Reference
  Authors
Sturfelt G, Truedsson L.
  Title
Complement and its breakdown products in SLE.
  Journal
Rheumatology (Oxford) 44:1227-32 (2005)
DOI:10.1093/rheumatology/keh719
Reference
  Authors
Lu L, Kaliyaperumal A, Boumpas DT, Datta SK.
  Title
Major peptide autoepitopes for nucleosome-specific T cells of human lupus.
  Journal
J Clin Invest 104:345-55 (1999)
DOI:10.1172/JCI6801
Reference
  Authors
Zieve GW, Khusial PR.
  Title
The anti-Sm immune response in autoimmunity and cell biology.
  Journal
Autoimmun Rev 2:235-40 (2003)
DOI:10.1016/S1568-9972(03)00018-1
Reference
  Authors
Scofield RH, Farris AD, Horsfall AC, Harley JB.
  Title
Fine specificity of the autoimmune response to the Ro/SSA and La/SSB ribonucleoproteins.
  Journal
Arthritis Rheum 42:199-209 (1999)
DOI:10.1002/1529-0131(199902)42:2<199::AID-ANR1>3.0.CO;2-1
Reference
  Authors
Hoffman RW.
  Title
T cells in the pathogenesis of systemic lupus erythematosus.
  Journal
Clin Immunol 113:4-13 (2004)
DOI:10.1016/j.clim.2004.05.001
Related
pathway
lav04060  Cytokine-cytokine receptor interaction
lav04514  Cell adhesion molecules
lav04610  Complement and coagulation cascades
lav04612  Antigen processing and presentation
lav04630  JAK-STAT signaling pathway
lav04660  T cell receptor signaling pathway
lav04662  B cell receptor signaling pathway
lav04670  Leukocyte transendothelial migration
KO pathway
ko05322   
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