KEGG   PATHWAY: lcf00970
Entry
lcf00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Lates calcarifer (barramundi perch)
Class
Genetic Information Processing; Translation
Pathway map
lcf00970  Aminoacyl-tRNA biosynthesis
lcf00970

Organism
Lates calcarifer (barramundi perch) [GN:lcf]
Gene
64987045  tRNA-Ala [KO:K14218]
64987036  tRNA-Arg [KO:K14219]
64987046  tRNA-Asn [KO:K14220]
64987049  tRNA-Asp [KO:K14221]
64987047  tRNA-Cys [KO:K14222]
64987031  tRNA-Gln [KO:K14223]
64987038  tRNA-Glu [KO:K14224]
64987035  tRNA-Gly [KO:K14225]
64987037  tRNA-His [KO:K14226]
64987034  tRNA-Lys [KO:K14229]
64987044  tRNA-Met [KO:K14230]
64987053  tRNA-Phe [KO:K14231]
64987052  tRNA-Pro [KO:K14232]
64987032  tRNA-Trp [KO:K14235]
64987048  tRNA-Tyr [KO:K14236]
108887216  probable glutamate--tRNA ligase, mitochondrial [KO:K01885] [EC:6.1.1.17]
108897686  LOW QUALITY PROTEIN: bifunctional glutamate/proline--tRNA ligase-like [KO:K14163] [EC:6.1.1.17 6.1.1.15]
108896098  glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [KO:K02433] [EC:6.3.5.6 6.3.5.7]
108893078  glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
108878201  glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial [KO:K02435] [EC:6.3.5.6 6.3.5.7]
108889503  qars1; glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
108882270  alanine--tRNA ligase, mitochondrial [KO:K01872] [EC:6.1.1.7]
108901892  aars1; alanine--tRNA ligase, cytoplasmic [KO:K01872] [EC:6.1.1.7]
108886894  dars1; LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic [KO:K22503] [EC:6.1.1.12]
108896684  aspartate--tRNA ligase, mitochondrial [KO:K01876] [EC:6.1.1.12]
108876203  probable asparagine--tRNA ligase, mitochondrial [KO:K01893] [EC:6.1.1.22]
108901162  nars1; asparagine--tRNA ligase, cytoplasmic isoform X1 [KO:K01893] [EC:6.1.1.22]
108881712  LOW QUALITY PROTEIN: glycine--tRNA ligase-like [KO:K01880] [EC:6.1.1.14]
108881715  LOW QUALITY PROTEIN: glycine--tRNA ligase-like [KO:K01880] [EC:6.1.1.14]
108885911  threonine--tRNA ligase 1, cytoplasmic [KO:K01868] [EC:6.1.1.3]
108897738  tars3; threonine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01868] [EC:6.1.1.3]
108881104  tars1; threonine--tRNA ligase 1, cytoplasmic [KO:K01868] [EC:6.1.1.3]
108874208  serine--tRNA ligase, mitochondrial [KO:K01875] [EC:6.1.1.11]
108882680  sars1; serine--tRNA ligase, cytoplasmic [KO:K01875] [EC:6.1.1.11]
108899017  L-seryl-tRNA(Sec) kinase [KO:K10837] [EC:2.7.1.164]
108892801  O-phosphoseryl-tRNA(Sec) selenium transferase [KO:K03341] [EC:2.9.1.2]
108894186  cars1; cysteine--tRNA ligase, cytoplasmic isoform X1 [KO:K01883] [EC:6.1.1.16]
108902553  probable cysteine--tRNA ligase, mitochondrial isoform X1 [KO:K01883] [EC:6.1.1.16]
108895370  methionine--tRNA ligase, mitochondrial [KO:K01874] [EC:6.1.1.10]
108884823  mars1; LOW QUALITY PROTEIN: methionine--tRNA ligase, cytoplasmic [KO:K01874] [EC:6.1.1.10]
108894203  methionyl-tRNA formyltransferase, mitochondrial [KO:K00604] [EC:2.1.2.9]
108880668  vars1; valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
108896389  valine--tRNA ligase, mitochondrial isoform X1 [KO:K01873] [EC:6.1.1.9]
108893533  lars1; leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
108889663  probable leucine--tRNA ligase, mitochondrial [KO:K01869] [EC:6.1.1.4]
108896107  isoleucine--tRNA ligase, mitochondrial isoform X1 [KO:K01870] [EC:6.1.1.5]
108891047  iars1; isoleucine--tRNA ligase, cytoplasmic isoform X1 [KO:K01870] [EC:6.1.1.5]
108890615  kars1; lysine--tRNA ligase isoform X1 [KO:K04567] [EC:6.1.1.6]
108873503  probable arginine--tRNA ligase, mitochondrial [KO:K01887] [EC:6.1.1.19]
108885349  rars1; arginine--tRNA ligase, cytoplasmic [KO:K01887] [EC:6.1.1.19]
108896934  probable proline--tRNA ligase, mitochondrial [KO:K01881] [EC:6.1.1.15]
108895522  hars; histidine--tRNA ligase isoform X1 [KO:K01892] [EC:6.1.1.21]
108874819  phenylalanine--tRNA ligase, mitochondrial isoform X2 [KO:K01889] [EC:6.1.1.20]
108898694  LOW QUALITY PROTEIN: phenylalanine--tRNA ligase alpha subunit [KO:K01889] [EC:6.1.1.20]
108888203  phenylalanine--tRNA ligase beta subunit [KO:K01890] [EC:6.1.1.20]
108900379  yars1; tyrosine--tRNA ligase, cytoplasmic [KO:K01866] [EC:6.1.1.1]
108883074  tyrosine--tRNA ligase, mitochondrial [KO:K01866] [EC:6.1.1.1]
108875047  wars1; tryptophan--tRNA ligase, cytoplasmic [KO:K01867] [EC:6.1.1.2]
108877095  tryptophan--tRNA ligase, mitochondrial [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
lcf00250  Alanine, aspartate and glutamate metabolism
lcf00260  Glycine, serine and threonine metabolism
lcf00270  Cysteine and methionine metabolism
lcf00290  Valine, leucine and isoleucine biosynthesis
lcf00330  Arginine and proline metabolism
lcf00340  Histidine metabolism
lcf00380  Tryptophan metabolism
lcf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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