KEGG   PATHWAY: mcep04622
Entry
mcep04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Mugil cephalus (flathead mullet)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
mcep04622  RIG-I-like receptor signaling pathway
mcep04622

Organism
Mugil cephalus (flathead mullet) [GN:mcep]
Gene
125018153  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
125007308  znfx1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
124997762  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
125023691  traf3; TNF receptor-associated factor 3 [KO:K03174]
125018173  tanK; TRAF family member-associated NF-kappa-B activator [KO:K12650]
125016203  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
125022995  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
124997691  TANK-binding kinase 1-binding protein 1-like isoform X1 [KO:K12652]
125022415  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
125000296  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
125007327  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
125022331  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
125014633  irf7; interferon regulatory factor 7 [KO:K09447]
125005746  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
125005173  fadD; protein FADD [KO:K02373]
125011224  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
125018228  casp10; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
125022650  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
125018358  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
125011866  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
125024054  nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha B [KO:K04734]
124999499  NF-kappa-B inhibitor alpha-like [KO:K04734]
125007804  nfkb1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
125010912  relA; transcription factor P65 [KO:K04735]
125012733  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
124996426  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
124997163  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
124998932  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
125005122  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
125019343  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
125022122  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
125008712  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
124997018  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
125006555  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
125019204  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
125015404  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
124999916  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
124999917  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
124997305  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
125010906  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
125004253  permeability factor 2-like [KO:K10030]
125006086  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
125020172  tnfA; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
125013840  il12a; interleukin-12 subunit alpha [KO:K05406]
125011367  uncharacterized protein zmp:0000001127 isoform X1 [KO:K05406]
125021783  il12bb; interleukin-12 subunit beta [KO:K05425]
125012641  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
125007734  il12ba; interleukin 12Ba isoform X1 [KO:K05425]
125016365  adaR; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
125013879  ftr86; finTRIM family, member 86 isoform X1 [KO:K10652] [EC:2.3.2.27]
125003621  zgc:92594; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
125003988  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
125004086  trim25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
124997232  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
124997280  E3 ubiquitin-protein ligase TRIM21-like [KO:K10652] [EC:2.3.2.27]
125007352  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
124995577  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
125010028  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
125005253  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
125016504  atg5; autophagy protein 5 isoform X1 [KO:K08339]
125017040  atg12; ubiquitin-like protein ATG12 [KO:K08336]
125013701  nlrx1; NLR family member X1 [KO:K12653]
125008176  sting1; stimulator of interferon genes protein [KO:K12654]
125009098  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
125015885  sike1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
125017976  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
125001267  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
125004185  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
125012353  tkfC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
mcep04010  MAPK signaling pathway
mcep04120  Ubiquitin mediated proteolysis
mcep04210  Apoptosis
KO pathway
ko04622   
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