KEGG   PATHWAY: pyo03040
Entry
pyo03040                    Pathway                                
Name
Spliceosome - Plasmodium yoelii
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
pyo03040  Spliceosome
pyo03040

Other DBs
GO: 0005681
PDB: 5O9Z 5Z56 6FF7 8I0W
Organism
Plasmodium yoelii [GN:pyo]
Gene
PY17X_0110200  [KO:K12819]
PY17X_0110300  [KO:K12822]
PY17X_0307400  [KO:K12812] [EC:5.6.2.7]
PY17X_0315700  [KO:K11096]
PY17X_0315900  [KO:K06063]
PY17X_0403200  [KO:K12862]
PY17X_0409000  [KO:K14278]
PY17X_0409200  [KO:K10599] [EC:2.3.2.27]
PY17X_0409500  [KO:K12828]
PY17X_0503800  [KO:K12834]
PY17X_0507700  [KO:K12893]
PY17X_0515200  [KO:K12818] [EC:5.6.2.6]
PY17X_0518500  [KO:K12860]
PY17X_0524500  [KO:K13025] [EC:5.6.2.7]
PY17X_0610100  [KO:K12626]
PY17X_0622700  [KO:K12863]
PY17X_0625400  [KO:K12877]
PY17X_0701700  [KO:K12627]
PY17X_0708100  [KO:K12857]
PY17X_0708600  [KO:K11099]
PY17X_0711100  [KO:K12622]
PY17X_0712100  [KO:K03283]
PY17X_0717700  [KO:K12883]
PY17X_0809000  [KO:K13107]
PY17X_0814300  [KO:K11088]
PY17X_0821900  [KO:K12820] [EC:5.6.2.6]
PY17X_0826900  [KO:K12817]
PY17X_0828900  [KO:K12827]
PY17X_0839200  [KO:K11094]
PY17X_0911500  [KO:K12864]
PY17X_0913100  [KO:K14277]
PY17X_0917300  [KO:K12849]
PY17X_0923500  [KO:K11098]
PY17X_0924800  [KO:K11087]
PY17X_0926400  [KO:K12845]
PY17X_0930800  [KO:K12836]
PY17X_0939400  [KO:K12855]
PY17X_0942400  [KO:K12623]
PY17X_1002800  [KO:K12869]
PY17X_1004500  [KO:K12856]
PY17X_1008100  [KO:K12844]
PY17X_1025100  [KO:K12831]
PY17X_1030300  [KO:K11086]
PY17X_1037300  [KO:K12850]
PY17X_1038600  [KO:K12876]
PY17X_1041700  [KO:K12842]
PY17X_1104100  [KO:K12900]
PY17X_1109400  [KO:K12811] [EC:5.6.2.7]
PY17X_1120200  [KO:K12826]
PY17X_1123900  [KO:K13095]
PY17X_1133600  [KO:K12832]
PY17X_1141600  [KO:K12815] [EC:5.6.2.6]
PY17X_1144300  [KO:K11093]
PY17X_1147000  [KO:K11092]
PY17X_1203900  [KO:K12897]
PY17X_1205300  [KO:K12852]
PY17X_1216700  [KO:K28527]
PY17X_1218000  [KO:K11984]
PY17X_1220100  [KO:K12835] [EC:5.6.2.7]
PY17X_1229000  [KO:K09567] [EC:5.2.1.8]
PY17X_1232600  [KO:K12861]
PY17X_1233900  [KO:K12881]
PY17X_1235500  [KO:K12890]
PY17X_1236700  [KO:K12858] [EC:5.6.2.7]
PY17X_1238500  [KO:K12621]
PY17X_1240800  [KO:K12873]
PY17X_1246700  [KO:K12733] [EC:5.2.1.8]
PY17X_1305300  [KO:K12825]
PY17X_1311000  [KO:K12624]
PY17X_1313500  [KO:K12823] [EC:5.6.2.7]
PY17X_1313600  [KO:K14279]
PY17X_1319000  [KO:K12871]
PY17X_1321500  [KO:K12840]
PY17X_1329100  [KO:K12829]
PY17X_1336700  [KO:K12837]
PY17X_1339900  [KO:K12870]
PY17X_1344900  [KO:K12625]
PY17X_1346200  [KO:K12837]
PY17X_1362600  [KO:K12662]
PY17X_1368700  [KO:K11097]
PY17X_1371100  [KO:K12874]
PY17X_1407100  [KO:K11091]
PY17X_1408000  [KO:K13108]
PY17X_1409600  [KO:K12843]
PY17X_1416700  [KO:K12821]
PY17X_1417200  [KO:K12847]
PY17X_1426800  [KO:K11095]
PY17X_1431100  [KO:K14276]
PY17X_1437700  [KO:K12816]
PY17X_1442300  [KO:K12833]
PY17X_1444400  [KO:K12823] [EC:5.6.2.7]
PY17X_1448700  [KO:K12859]
PY17X_1451900  [KO:K12830]
PY17X_1453000  [KO:K12867]
PY17X_1462300  [KO:K13106]
PY17X_1463700  [KO:K12872]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
Reference
  Authors
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
  Journal
Cell 170:701-713.e11 (2017)
DOI:10.1016/j.cell.2017.07.011
Reference
  Authors
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y
  Title
Structure of the human activated spliceosome in three conformational states.
  Journal
Cell Res 28:307-322 (2018)
DOI:10.1038/cr.2018.14
Reference
  Authors
Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.
  Journal
Cell 172:454-464.e11 (2018)
DOI:10.1016/j.cell.2018.01.010
Reference
  Authors
Zhan X, Lu Y, Shi Y
  Title
Molecular basis for the activation of human spliceosome.
  Journal
Nat Commun 15:6348 (2024)
DOI:10.1038/s41467-024-50785-0
KO pathway
ko03040   

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