KEGG   PATHWAY: sscv04146
Entry
sscv04146                   Pathway                                
Name
Peroxisome - Syngnathus scovelli (Gulf pipefish)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
sscv04146  Peroxisome
sscv04146

Other DBs
GO: 0005777
Organism
Syngnathus scovelli (Gulf pipefish) [GN:sscv]
Gene
125967120  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125967124  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125967732  nudt19; acyl-coenzyme A diphosphatase NUDT19 [KO:K13355] [EC:3.6.1.77]
125968480  pex6; peroxisomal ATPase PEX6 [KO:K13339]
125968786  prdx2; peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
125969122  [KO:K13349]
125969279  acsl1a; long-chain-fatty-acid--CoA ligase 1a isoform X1 [KO:K01897] [EC:6.2.1.3]
125969502  pex5la; PEX5-related protein isoform X1 [KO:K13342]
125969558  acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
125970294  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
125970374  cat; catalase [KO:K03781] [EC:1.11.1.6]
125970450  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
125970533  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125970691  pex11a; peroxisomal membrane protein 11A [KO:K13351]
125970725  agxta; alanine--glyoxylate and serine--pyruvate aminotransferase a [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125971004  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
125971216  far1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
125971364  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125971772  acsl3a; long-chain-fatty-acid--CoA ligase 3a [KO:K01897] [EC:6.2.1.3]
125972064  ech1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
125973252  hao2; 2-Hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
125973324  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
125973379  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
125973709  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
125974744  si:ch211-120k19.1; mpv17-like protein [KO:K13349]
125974882  pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
125974891  pex11g; peroxisomal membrane protein 11C [KO:K13353]
125975380  crot; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
125975603  hacl1; 2-hydroxyacyl-CoA lyase 1 isoform X2 [KO:K12261] [EC:4.1.2.63]
125975675  pex5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
125975799  gstk1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
125976153  dhrs4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
125976298  mpv17l2; mpv17-like protein 2 [KO:K13348]
125976742  acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
125976910  [KO:K00659] [EC:2.3.1.65 3.1.2.2]
125977042  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
125977075  [KO:K01897] [EC:6.2.1.3]
125978397  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
125978466  pex13; peroxisome biogenesis factor 13 [KO:K13344]
125979053  hmgcll1; 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
125979205  crata; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
125979567  amacr; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
125980528  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
125981061  ddo; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
125981886  [KO:K01897] [EC:6.2.1.3]
125982423  sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
125982576  prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
125983040  acsl4a; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
125983063  hao1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
125983067  pex12; peroxisome assembly protein 12 [KO:K13345]
125983108  [KO:K13349]
125983222  slc25a17l; peroxisomal membrane protein PMP34 [KO:K13354]
125983534  slc25a17; peroxisomal membrane protein PMP34 [KO:K13354]
125984450  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
125984714  acsl3b; long-chain-fatty-acid--CoA ligase 3b [KO:K01897] [EC:6.2.1.3]
125984846  pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
125985012  agxtb; alanine--glyoxylate and serine--pyruvate aminotransferase b [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125985392  prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
125985489  scp2a; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
125985645  eci2; enoyl-CoA delta isomerase 2 [KO:K13239] [EC:5.3.3.8]
125985737  abcd3a; ATP-binding cassette sub-family D member 3a isoform X1 [KO:K05677] [EC:7.6.2.4]
125986016  pex2; peroxisome biogenesis factor 2 [KO:K06664]
125986733  cratb; carnitine O-acetyltransferase b [KO:K00624] [EC:2.3.1.7]
125987172  pex11b; peroxisomal membrane protein 11B [KO:K13352]
125987385  pex1; peroxisomal ATPase PEX1 isoform X1 [KO:K13338]
125987737  pex10; peroxisome biogenesis factor 10 [KO:K13346]
125988038  xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
125988618  pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
125989865  pex7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
125990024  abcd4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
125990378  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
125990382  mpv17; protein Mpv17 [KO:K13348]
125990395  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
125990415  [KO:K00649] [EC:2.3.1.42]
125990436  pex3; peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
125991339  acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
125991738  decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
125991913  [KO:K05676] [EC:7.6.2.4]
125992148  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
125992154  pex26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
125992175  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
125992225  phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
125993710  [KO:K00273] [EC:1.4.3.3]
125993712  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
125993727  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
125994070  nudt12; NAD-capped RNA hydrolase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
125994298  [KO:K00624] [EC:2.3.1.7]
125994378  acsl2; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
sscv00071  Fatty acid degradation
sscv00120  Primary bile acid biosynthesis
sscv00230  Purine metabolism
sscv00564  Glycerophospholipid metabolism
sscv00565  Ether lipid metabolism
sscv00830  Retinol metabolism
sscv00900  Terpenoid backbone biosynthesis
sscv03320  PPAR signaling pathway
KO pathway
ko04146   

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