KEGG   PATHWAY: sscv04146
Entry
sscv04146                   Pathway                                
Name
Peroxisome - Syngnathus scovelli (Gulf pipefish)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
sscv04146  Peroxisome
sscv04146

Other DBs
GO: 0005777
Organism
Syngnathus scovelli (Gulf pipefish) [GN:sscv]
Gene
125990436  peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
125984450  peroxisomal biogenesis factor 19 [KO:K13337]
125985737  ATP-binding cassette sub-family D member 3a isoform X1 [KO:K05677] [EC:7.6.2.4]
125987385  peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
125968480  peroxisome assembly factor 2 [KO:K13339]
125992154  peroxisome assembly protein 26 isoform X1 [KO:K13340]
125989865  peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
125975675  peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
125969502  PEX5-related protein isoform X1 [KO:K13342]
125988618  peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
125978466  peroxisome biogenesis factor 13 [KO:K13344]
125983067  peroxisome assembly protein 12 [KO:K13345]
125987737  peroxisome biogenesis factor 10 [KO:K13346]
125986016  peroxisome biogenesis factor 2 [KO:K06664]
125993712  peroxisomal membrane protein 2 [KO:K13347]
125976298  mpv17-like protein 2 [KO:K13348]
125990382  protein Mpv17 [KO:K13348]
125983108  mpv17-like protein isoform X1 [KO:K13349]
125969122  mpv17-like protein [KO:K13349]
125974744  si:ch211-120k19.1; mpv17-like protein [KO:K13349]
125977042  peroxisomal membrane protein 4 [KO:K13350]
125970691  peroxisomal membrane protein 11A [KO:K13351]
125987172  peroxisomal membrane protein 11B [KO:K13352]
125974891  peroxisomal membrane protein 11C [KO:K13353]
125983222  peroxisomal membrane protein PMP34 [KO:K13354]
125983534  peroxisomal membrane protein PMP34 [KO:K13354]
125975603  2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
125979567  alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
125992225  phytanoyl-CoA dioxygenase, peroxisomal isoform X1 [KO:K00477] [EC:1.14.11.18]
125969558  peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
125992175  peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
125993727  peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
125985489  sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
125976910  peroxisomal succinyl-coenzyme A thioesterase-like isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
125973324  peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
125991738  peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
125972064  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
125991913  ATP-binding cassette sub-family D member 2-like isoform X1 [KO:K05676] [EC:7.6.2.4]
125990024  ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
125967120  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125967124  zgc:158482; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125970533  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125971364  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125983040  long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
125977075  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
125969279  long-chain-fatty-acid--CoA ligase 1a isoform X1 [KO:K01897] [EC:6.2.1.3]
125984714  long-chain-fatty-acid--CoA ligase 3b [KO:K01897] [EC:6.2.1.3]
125991339  long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
125971772  long-chain-fatty-acid--CoA ligase 3a [KO:K01897] [EC:6.2.1.3]
125994378  long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
125981886  long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
125984846  peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
125985645  enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
125971004  peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
125994070  peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
125967732  nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
125976742  acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
125979205  carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
125986733  carnitine O-acetyltransferase b [KO:K00624] [EC:2.3.1.7]
125994298  carnitine O-acetyltransferase-like isoform X1 [KO:K00624] [EC:2.3.1.7]
125975380  peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
125970450  malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
125990395  dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
125990415  dihydroxyacetone phosphate acyltransferase-like [KO:K00649] [EC:2.3.1.42]
125973379  alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
125971216  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
125992148  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
125974882  phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
125985012  alanine--glyoxylate and serine--pyruvate aminotransferase b [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125970725  alanine--glyoxylate and serine--pyruvate aminotransferase a [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125993710  D-amino-acid oxidase-like [KO:K00273] [EC:1.4.3.3]
125981061  D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
125970294  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
125973709  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
125978397  peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
125979053  3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
125980528  hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
125983063  hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
125973252  hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
125970374  catalase [KO:K03781] [EC:1.11.1.6]
125982576  peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
125982423  superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
125990378  superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
125968786  peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
125985392  peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
125975799  glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
125988038  xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
125976153  dehydrogenase/reductase SDR family member 4 isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
sscv00071  Fatty acid degradation
sscv00120  Primary bile acid biosynthesis
sscv00230  Purine metabolism
sscv00564  Glycerophospholipid metabolism
sscv00565  Ether lipid metabolism
sscv00830  Retinol metabolism
sscv00900  Terpenoid backbone biosynthesis
sscv03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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