KEGG   PATHWAY: pprl00510
Entry
pprl00510                   Pathway                                
Name
N-Glycan biosynthesis - Poeciliopsis prolifica (blackstripe livebearer)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
pprl00510  N-Glycan biosynthesis
pprl00510

Module
pprl_M00072  N-glycosylation by oligosaccharyltransferase [PATH:pprl00510]
pprl_M00073  N-glycan precursor trimming [PATH:pprl00510]
pprl_M00075  N-glycan biosynthesis, complex type [PATH:pprl00510]
Other DBs
GO: 0006487
Organism
Poeciliopsis prolifica (blackstripe livebearer) [GN:pprl]
Gene
129351035  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
129351596  man1b1b; mannosidase, alpha, class 1B, member 1b isoform X1 [KO:K23741]
129352767  mgat1b; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b [KO:K00726] [EC:2.4.1.101]
129353440  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X1 [KO:K07441] [EC:2.4.1.141]
129353518  [KO:K00726] [EC:2.4.1.101]
129353575  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
129353848  zgc:154054; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like isoform X1 [KO:K00738] [EC:2.4.1.145]
129354179  rpn1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 isoform X1 [KO:K12666]
129354291  [KO:K09658]
129354330  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129354410  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129355027  [KO:K09658]
129356031  [KO:K07432] [EC:2.4.1.141]
129356208  [KO:K01231] [EC:3.2.1.114]
129356464  [KO:K11170] [EC:1.1.1.441]
129356960  [KO:K01231] [EC:3.2.1.114]
129357361  st6gal1; beta-galactoside alpha-2,6-sialyltransferase 1 isoform X1 [KO:K00778] [EC:2.4.3.1]
129357980  [KO:K28202]
129358441  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [KO:K12667]
129360294  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129360620  [KO:K00738] [EC:2.4.1.145]
129360752  [KO:K07432] [EC:2.4.1.141]
129360756  [KO:K07432] [EC:2.4.1.141]
129361056  st6gal2a; beta-galactoside alpha-2,6-sialyltransferase 2 [KO:K00779] [EC:2.4.3.1]
129361073  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB isoform X1 [KO:K01230] [EC:3.2.1.113]
129361131  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
129361342  [KO:K11170] [EC:1.1.1.441]
129361968  man2a2; alpha-mannosidase 2x [KO:K01231] [EC:3.2.1.114]
129362013  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
129362022  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129362067  dad1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
129362100  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
129362642  ganabb; neutral alpha-glucosidase AB isoform X1 [KO:K05546] [EC:3.2.1.207]
129363650  [KO:K09661] [EC:2.4.1.-]
129364540  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129366577  man1b1a; endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
129366909  [KO:K00737] [EC:2.4.1.144]
129367015  tmem258; transmembrane protein 258 [KO:K26502]
129367233  mogs; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
129367256  tusc3; tumor suppressor candidate 3 [KO:K19478]
129367501  [KO:K07151] [EC:2.4.99.18]
129368396  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase isoform X1 [KO:K01001] [EC:2.7.8.15]
129368590  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
129368693  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
129369098  mgat2; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
129369189  [KO:K00736] [EC:2.4.1.143]
129370639  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X1 [KO:K03849] [EC:2.4.1.265]
129370909  [KO:K01230] [EC:3.2.1.113]
129371289  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
129371567  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
129371640  dpm1; dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
129371691  zgc:101663; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1 [KO:K13748] [EC:2.4.1.201 2.4.1.145]
129371777  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
129371984  mgat4c; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
129372496  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
129373277  ostc; oligosaccharyltransferase complex subunit ostc [KO:K26501]
129373442  alg5; dolichyl-phosphate beta-glucosyltransferase isoform X1 [KO:K00729] [EC:2.4.1.117]
129373936  alg1; chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [KO:K03842] [EC:2.4.1.142]
129374247  dolpp1; dolichyldiphosphatase 1 [KO:K07252] [EC:3.6.1.43]
129374335  dolk; LOW QUALITY PROTEIN: dolichol kinase [KO:K00902] [EC:2.7.1.108]
129374487  [KO:K00744] [EC:2.4.1.155]
129374936  dpm3; dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
129374990  [KO:K07151] [EC:2.4.99.18]
129375273  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
129375292  fut8b; alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
129375515  srd5a3; polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
129376166  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1 [KO:K03847] [EC:2.4.1.260]
129376224  alg10; dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
129377893  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
129378948  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129378949  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
129379039  mgat5; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A [KO:K00744] [EC:2.4.1.155]
129379097  [KO:K03844] [EC:2.4.1.131]
129379303  [KO:K03844] [EC:2.4.1.131]
129379966  [KO:K00726] [EC:2.4.1.101]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
pprl00051  Fructose and mannose metabolism
pprl00511  Other glycan degradation
pprl00513  Various types of N-glycan biosynthesis
pprl00515  Mannose type O-glycan biosynthesis
pprl00520  Amino sugar and nucleotide sugar metabolism
pprl00533  Glycosaminoglycan biosynthesis - keratan sulfate
pprl00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
pprl00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

DBGET integrated database retrieval system