KEGG   PATHWAY: srx00510
Entry
srx00510                    Pathway                                
Name
N-Glycan biosynthesis - Sinocyclocheilus rhinocerous
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
srx00510  N-Glycan biosynthesis
srx00510

Module
srx_M00072  N-glycosylation by oligosaccharyltransferase [PATH:srx00510]
srx_M00073  N-glycan precursor trimming [PATH:srx00510]
srx_M00075  N-glycan biosynthesis, complex type [PATH:srx00510]
Other DBs
GO: 0006487
Organism
Sinocyclocheilus rhinocerous [GN:srx]
Gene
107705745  [KO:K07151] [EC:2.4.99.18]
107705910  [KO:K00737] [EC:2.4.1.144]
107705981  [KO:K00902] [EC:2.7.1.108]
107705991  [KO:K07252] [EC:3.6.1.43]
107706186  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
107706481  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
107707204  [KO:K07432] [EC:2.4.1.141]
107707840  alg11; GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [KO:K03844] [EC:2.4.1.131]
107709235  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
107709694  [KO:K23741]
107711329  [KO:K00726] [EC:2.4.1.101]
107711520  [KO:K01228] [EC:3.2.1.106]
107712247  [KO:K01230] [EC:3.2.1.113]
107712383  [KO:K09658]
107712384  [KO:K09658]
107712663  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
107712706  [KO:K00721] [EC:2.4.1.83]
107712792  [KO:K07441] [EC:2.4.1.141]
107713046  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107713199  [KO:K07432] [EC:2.4.1.141]
107713681  [KO:K12668]
107713794  [KO:K07151] [EC:2.4.99.18]
107713844  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
107713850  [KO:K01230] [EC:3.2.1.113]
107714300  [KO:K11170] [EC:1.1.1.441]
107714495  [KO:K12666]
107714714  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
107716121  ddost; LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
107716800  [KO:K00779] [EC:2.4.3.1]
107717362  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
107717863  [KO:K26501]
107717864  [KO:K26501]
107717886  [KO:K01001] [EC:2.7.8.15]
107718431  srd5a3; polyprenol reductase isoform X1 [KO:K12345] [EC:1.3.1.22 1.3.1.94]
107719005  [KO:K03849] [EC:2.4.1.265]
107719740  [KO:K03844] [EC:2.4.1.131]
107719770  [KO:K01228] [EC:3.2.1.106]
107720774  [KO:K01231] [EC:3.2.1.114]
107721156  [KO:K03850] [EC:2.4.1.256]
107721595  [KO:K00738] [EC:2.4.1.145]
107721598  [KO:K00779] [EC:2.4.3.1]
107721641  man2a1; alpha-mannosidase 2 isoform X1 [KO:K01231] [EC:3.2.1.114]
107722752  [KO:K05546] [EC:3.2.1.207]
107722798  [KO:K01001] [EC:2.7.8.15]
107723150  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107723151  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107723380  [KO:K28202]
107723517  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
107723596  [KO:K00737] [EC:2.4.1.144]
107724469  [KO:K01230] [EC:3.2.1.113]
107726313  [KO:K12668]
107726709  [KO:K00736] [EC:2.4.1.143]
107726710  [KO:K00717] [EC:2.4.1.68]
107726832  [KO:K03850] [EC:2.4.1.256]
107727268  [KO:K07432] [EC:2.4.1.141]
107727625  [KO:K01230] [EC:3.2.1.113]
107728126  [KO:K00736] [EC:2.4.1.143]
107728859  [KO:K00729] [EC:2.4.1.117]
107729795  [KO:K01230] [EC:3.2.1.113]
107729986  [KO:K12668]
107730451  [KO:K03845] [EC:2.4.1.258]
107730506  mgat4c; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
107730605  [KO:K00736] [EC:2.4.1.143]
107730665  [KO:K05546] [EC:3.2.1.207]
107730685  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1 [KO:K03847] [EC:2.4.1.260]
107730784  [KO:K00717] [EC:2.4.1.68]
107730805  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107730945  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
107731443  [KO:K03849] [EC:2.4.1.265]
107731646  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
107731677  [KO:K09661] [EC:2.4.1.-]
107731701  [KO:K19478]
107732277  [KO:K26502]
107732491  [KO:K00736] [EC:2.4.1.143]
107733188  [KO:K00717] [EC:2.4.1.68]
107733409  [KO:K19478]
107733437  [KO:K00738] [EC:2.4.1.145]
107733873  [KO:K03842] [EC:2.4.1.142]
107734448  alg5; dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
107734672  [KO:K26502]
107736907  [KO:K23741]
107737174  [KO:K07252] [EC:3.6.1.43]
107737192  [KO:K00902] [EC:2.7.1.108]
107737602  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
107737638  [KO:K00778] [EC:2.4.3.1]
107737669  [KO:K12670]
107737709  [KO:K00721] [EC:2.4.1.83]
107737986  [KO:K00737] [EC:2.4.1.144]
107738307  [KO:K00779] [EC:2.4.3.1]
107738611  [KO:K03842] [EC:2.4.1.142]
107739035  [KO:K07441] [EC:2.4.1.141]
107739338  [KO:K00744] [EC:2.4.1.155]
107739489  [KO:K09659]
107739703  [KO:K23741]
107740022  [KO:K05546] [EC:3.2.1.207]
107740326  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
107742905  [KO:K12667]
107743022  [KO:K09661] [EC:2.4.1.-]
107743323  [KO:K01230] [EC:3.2.1.113]
107743811  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
107744844  [KO:K12666]
107745128  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
107745197  [KO:K00738] [EC:2.4.1.145]
107745341  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [KO:K12667]
107745986  [KO:K00744] [EC:2.4.1.155]
107746337  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
107746640  [KO:K11170] [EC:1.1.1.441]
107747398  [KO:K19478]
107748515  [KO:K09658]
107748529  [KO:K00779] [EC:2.4.3.1]
107748818  [KO:K00737] [EC:2.4.1.144]
107749127  [KO:K03845] [EC:2.4.1.258]
107749416  [KO:K07252] [EC:3.6.1.43]
107749726  [KO:K00738] [EC:2.4.1.145]
107749927  [KO:K00778] [EC:2.4.3.1]
107750327  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107750719  [KO:K01231] [EC:3.2.1.114]
107750811  [KO:K09659]
107751258  [KO:K01231] [EC:3.2.1.114]
107751321  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
107751681  [KO:K07151] [EC:2.4.99.18]
107752081  [KO:K07432] [EC:2.4.1.141]
107752174  [KO:K00726] [EC:2.4.1.101]
107752771  [KO:K00717] [EC:2.4.1.68]
107754829  [KO:K00726] [EC:2.4.1.101]
107755245  [KO:K12345] [EC:1.3.1.22 1.3.1.94]
107756453  [KO:K00738] [EC:2.4.1.145]
107756491  [KO:K05546] [EC:3.2.1.207]
107757969  [KO:K23741]
107758586  [KO:K07151] [EC:2.4.99.18]
107758898  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
srx00051  Fructose and mannose metabolism
srx00511  Other glycan degradation
srx00513  Various types of N-glycan biosynthesis
srx00515  Mannose type O-glycan biosynthesis
srx00520  Amino sugar and nucleotide sugar metabolism
srx00533  Glycosaminoglycan biosynthesis - keratan sulfate
srx00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
srx00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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