KEGG   PATHWAY: tge04137
Entry
tge04137                    Pathway                                
Name
Mitophagy - animal - Theropithecus gelada (gelada)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
tge04137  Mitophagy - animal
tge04137

Other DBs
GO: 0000422
Organism
Theropithecus gelada (gelada) [GN:tge]
Gene
112605118  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 isoform X1 [KO:K08860] [EC:2.7.11.1]
112605337  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
112605794  RELA; transcription factor p65 isoform X1 [KO:K04735]
112606260  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
112606606  AMBRA1; activating molecule in BECN1-regulated autophagy protein 1 [KO:K17985]
112606618  BECN2; beclin-2 [KO:K08334]
112606963  RRAS2; ras-related protein R-Ras2 isoform X1 [KO:K07830]
112607036  NLRX1; NLR family member X1 [KO:K12653]
112607359  HRAS; GTPase HRas isoform X1 [KO:K02833]
112607814  VCP; transitional endoplasmic reticulum ATPase isoform X1 [KO:K13525]
112608018  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
112608867  UBB; polyubiquitin-B [KO:K04551]
112608982  GABARAP; gamma-aminobutyric acid receptor-associated protein isoform X1 [KO:K08341]
112608984  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348]
112609356  BECN1; beclin-1 [KO:K08334]
112609434  RHOT1; mitochondrial Rho GTPase 1 isoform X1 [KO:K07870] [EC:3.6.5.-]
112609732  RAB7B; ras-related protein Rab-7b isoform X1 [KO:K07898]
112610002  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
112610047  NBR1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
112610136  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
112610199  TP53; cellular tumor antigen p53 isoform X1 [KO:K04451]
112610415  RAB5C; ras-related protein Rab-5C isoform X1 [KO:K07889]
112612007  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
112612289  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1 [KO:K09574] [EC:5.2.1.8]
112612574  RRAS; ras-related protein R-Ras isoform X1 [KO:K07829]
112612626  TBC1D17; TBC1 domain family member 17 isoform X1 [KO:K19945]
112612928  TOMM40; mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
112613697  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
112613773  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
112614047  RHOT2; mitochondrial Rho GTPase 2 isoform X1 [KO:K07871] [EC:3.6.5.-]
112614142  MON1B; vacuolar fusion protein MON1 homolog B isoform X1 [KO:K20195]
112614262  AMFR; E3 ubiquitin-protein ligase AMFR isoform X1 [KO:K10636] [EC:2.3.2.36]
112614272  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
112614444  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B isoform X1 [KO:K10435]
112614645  [KO:K17770]
112614987  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
112615850  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
112616010  TFE3; transcription factor E3 isoform X1 [KO:K09105]
112616416  [KO:K04506] [EC:2.3.2.27]
112616986  [KO:K17770]
112618473  TOMM70; mitochondrial import receptor subunit TOM70 [KO:K17768]
112618707  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
112618724  OPA1; dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
112618812  RAB7A; ras-related protein Rab-7a isoform X1 [KO:K07897]
112618821  MRAS; ras-related protein M-Ras isoform X1 [KO:K07831]
112619023  MFN2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
112619083  RAB5A; ras-related protein Rab-5A [KO:K07887]
112619108  MON1A; vacuolar fusion protein MON1 homolog A isoform X1 [KO:K20195]
112619118  MFN1; mitofusin-1 isoform X1 [KO:K21356] [EC:3.6.5.-]
112619416  NRAS; GTPase NRas isoform X1 [KO:K07828]
112619417  [KO:K02927]
112619625  JUN; transcription factor AP-1 [KO:K04448]
112620074  [KO:K02977]
112620247  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
112620360  ATG9B; LOW QUALITY PROTEIN: autophagy-related protein 9B [KO:K17907]
112620487  TOMM7; mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
112620714  [KO:K02927]
112620818  [KO:K27045]
112620860  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
112621021  FIS1; mitochondrial fission 1 protein [KO:K17969]
112621763  [KO:K27045]
112621801  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
112622339  CSNK2B; casein kinase II subunit beta isoform X1 [KO:K03115]
112622369  MTX1; LOW QUALITY PROTEIN: metaxin-1 [KO:K17776]
112622391  FOXO3; forkhead box protein O3 [KO:K09408]
112623249  CITED2; cbp/p300-interacting transactivator 2 isoform X1 [KO:K21361]
112623285  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 isoform X1 [KO:K15688] [EC:2.3.2.27]
112623531  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
112623752  TFEB; transcription factor EB isoform X1 [KO:K15590]
112624632  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
112624811  [KO:K02927]
112625376  [KO:K08341]
112626197  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
112626276  MTX3; metaxin-3 isoform X1 [KO:K17776]
112626308  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
112627585  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
112627627  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
112629008  [KO:K17081]
112629021  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
112629175  HIF1A; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
112629469  TOMM20L; TOMM20-like protein 1 [KO:K17770]
112630426  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like isoform X1 [KO:K15465]
112631172  BNIP3; LOW QUALITY PROTEIN: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
112631202  TOMM40L; mitochondrial import receptor subunit TOM40B isoform X1 [KO:K11518]
112631512  OPTN; optineurin [KO:K19946]
112631631  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
112632203  MARCH5; E3 ubiquitin-protein ligase MARCH5 isoform X1 [KO:K10660] [EC:2.3.2.27]
112632664  ATF4; cyclic AMP-dependent transcription factor ATF-4 isoform X1 [KO:K04374]
112632687  CSNK2A1; casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
112632741  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
112632856  BCL2L1; bcl-2-like protein 1 isoform X1 [KO:K04570]
112632890  E2F1; transcription factor E2F1 [KO:K17454]
112633256  BCL2L13; bcl-2-like protein 13 isoform X1 [KO:K15485]
112633328  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A isoform X1 [KO:K10435]
112633533  SRC; proto-oncogene tyrosine-protein kinase Src [KO:K05704] [EC:2.7.10.2]
112633963  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1 [KO:K08341]
112634015  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
112634105  KRAS; GTPase KRas isoform X1 [KO:K07827]
112634219  RAB5B; ras-related protein Rab-5B isoform X1 [KO:K07888]
112634455  TBC1D15; TBC1 domain family member 15 isoform X1 [KO:K20168]
112634621  USP15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
112634626  SP1; transcription factor Sp1 isoform X1 [KO:K04684]
112634975  ULK1; serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
112635245  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
112635509  USP30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
112635584  PHB2; prohibitin-2 isoform X1 [KO:K17081]
112636608  MTX2; metaxin-2 isoform X1 [KO:K17776]
112636725  ATG9A; autophagy-related protein 9A [KO:K17907]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
tge04140  Autophagy - animal
tge04210  Apoptosis
KO pathway
ko04137   

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