KEGG   PATHWAY: tpai04120
Entry
tpai04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Tympanuchus pallidicinctus (lesser prairie-chicken)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tpai04120  Ubiquitin mediated proteolysis
tpai04120

Other DBs
GO: 0016567
Organism
Tympanuchus pallidicinctus (lesser prairie-chicken) [GN:tpai]
Gene
128071738  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
128071770  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
128071830  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
128072361  CDC20; cell division cycle protein 20 homolog [KO:K03363]
128072410  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
128072954  [KO:K07868]
128073149  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
128073530  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
128073610  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
128073880  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
128074094  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
128074312  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
128074317  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
128074484  FBXO4; F-box only protein 4 [KO:K10291]
128074502  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
128074527  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
128074559  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
128074644  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
128074803  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
128074845  CUL5; cullin-5 [KO:K10612]
128074980  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
128075206  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
128075278  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
128075353  [KO:K10054] [EC:2.3.2.-]
128075354  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
128075359  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
128075415  DET1; DET1 homolog isoform X1 [KO:K10571]
128075438  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
128075849  CUL4B; cullin-4B [KO:K10609]
128075876  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
128076061  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
128076243  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
128076613  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
128076823  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
128076962  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
128077484  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
128077562  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
128077939  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
128077995  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
128078101  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
128078278  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
128078415  [KO:K03871]
128078936  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
128078948  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
128079104  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
128079307  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
128079366  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
128079513  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
128079758  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
128079803  [KO:K10447]
128079981  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
128080235  UBOX5; RING finger protein 37 [KO:K10600]
128080336  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
128080457  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
128080686  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
128080690  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
128080707  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
128080883  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
128080954  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
128081047  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
128081140  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
128081167  [KO:K06689] [EC:2.3.2.23]
128081169  [KO:K06689] [EC:2.3.2.23]
128081170  [KO:K06689] [EC:2.3.2.23]
128081171  [KO:K06689] [EC:2.3.2.23]
128081172  [KO:K06689] [EC:2.3.2.23]
128081227  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
128081377  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
128081548  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
128081894  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
128082005  AIRE; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
128082300  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
128082321  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
128082335  CUL3; cullin-3 [KO:K03869]
128082410  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
128082577  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
128082734  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
128082777  ANAPC13; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 13 [KO:K12456]
128082919  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
128082927  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
128083007  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
128083261  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
128083479  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
128083592  UBB; polyubiquitin-B isoform X1 [KO:K04551]
128083696  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
128083846  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
128083854  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
128083975  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
128084036  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
128084328  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
128084417  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
128084457  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
128084478  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
128084630  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
128084634  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
128084760  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
128084776  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
128084804  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
128084836  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
128084948  FBXO2; F-box only protein 2 isoform X1 [KO:K10099]
128084979  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
128085180  [KO:K20217] [EC:2.3.2.23]
128085181  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
128085456  CUL2; cullin-2 isoform X1 [KO:K03870]
128085502  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04552] [EC:2.3.2.23]
128085633  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
128085668  PRPF19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
128086324  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
128086808  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
128087131  DDB1; DNA damage-binding protein 1 [KO:K10610]
128087483  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
128087580  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
128087694  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
128087775  CUL1; cullin-1 isoform X1 [KO:K03347]
128088586  RRP8; ribosomal RNA-processing protein 8 isoform X1 [KO:K10260]
128088723  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
128088914  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
128089158  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
128089488  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
128090035  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
128090141  FZR1; LOW QUALITY PROTEIN: fizzy-related protein homolog [KO:K03364]
128090366  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
128090385  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
128090419  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
128090844  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
128090993  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
128090994  ELOC; elongin-C [KO:K03872]
128091495  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
128091535  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
128091752  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
128092163  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
128092226  CUL4A; cullin-4A [KO:K10609]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
tpai03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system