KEGG   PATHWAY: vvp04120
Entry
vvp04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Vulpes vulpes (red fox)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
vvp04120  Ubiquitin mediated proteolysis
vvp04120

Other DBs
GO: 0016567
Organism
Vulpes vulpes (red fox) [GN:vvp]
Gene
112924926  UBB; polyubiquitin-B [KO:K04551]
112913082  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
112907861  LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40-like [KO:K02927]
112915259  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
112907260  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
112931526  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
112928433  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
112909129  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
112911352  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
112923695  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
112910574  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
112917053  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
112931928  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
112908348  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
112931056  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
112933973  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
112925591  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
112925595  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
112934863  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
112908778  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
112924762  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
112909535  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
112928926  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
112908973  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
112908420  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
112926145  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
112919446  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
112907445  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
112930581  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
112908800  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
112921655  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112917985  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112917600  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112914910  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
112932822  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112932868  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112928967  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112915544  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
112913808  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112917147  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112932306  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
112920828  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
112917899  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
112918797  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
112934249  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
112927548  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
112935497  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
112909362  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
112907896  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
112930294  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
112918127  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
112933011  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
112907083  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
112910511  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
112916326  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
112910026  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
112920646  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
112928234  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
112930774  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
112929479  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
112925521  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
112918445  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
112919291  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
112911949  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
112916931  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
112924100  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
112907079  E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
112919647  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
112923655  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
112920350  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
112924658  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
112909092  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
112907546  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
112911072  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
112930100  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
112922285  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
112920322  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
112913407  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
112931540  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
112932949  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
112931753  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
112918012  PML; protein PML [KO:K10054] [EC:2.3.2.-]
112930471  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
112935233  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
112921727  COP1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
112915542  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
112925935  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
112925936  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
112934433  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
112932256  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
112930819  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
112918851  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
112907676  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
112935494  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
112924274  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
112920428  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
112909565  AIRE; autoimmune regulator [KO:K10603]
112923219  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
112910801  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
112915267  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
112932373  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
112923098  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
112917929  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
112934005  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
112934801  CUL1; cullin-1 [KO:K03347]
112917057  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
112926170  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
112915141  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
112933526  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
112933465  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
112929691  FBXO2; F-box only protein 2 [KO:K10099]
112933525  FBXO4; F-box only protein 4 [KO:K10291]
112921562  CUL2; cullin-2 [KO:K03870]
112930296  ELOC; elongin-C [KO:K03872]
112908995  ELOB; elongin-B [KO:K03873]
112933697  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
112925537  CUL3; cullin-3 isoform X1 [KO:K03869]
112908040  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
112910725  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
112911641  KLHL9; kelch-like protein 9 [KO:K10447]
112931040  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
112926810  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
112927492  CUL4A; cullin-4A [KO:K10609]
112934425  CUL4B; cullin-4B isoform X1 [KO:K10609]
112911054  DDB1; DNA damage-binding protein 1 [KO:K10610]
112924073  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
112935354  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
112921826  DET1; DET1 homolog isoform X1 [KO:K10571]
112934967  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
112925956  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
112923240  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
112920856  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
112914002  CUL7; cullin-7 isoform X1 [KO:K10613]
112932929  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
112920901  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
112911423  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
112914971  CDC20; cell division cycle protein 20 homolog [KO:K03363]
112935498  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
112916635  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
112920690  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
112918997  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
112935185  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
112927439  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
112935182  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
112921959  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
112934689  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
112923073  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
112932498  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
112928693  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
112924134  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
vvp03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system