KEGG   PATHWAY: ccar00510
Entry
ccar00510                   Pathway                                
Name
N-Glycan biosynthesis - Cyprinus carpio (common carp)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
ccar00510  N-Glycan biosynthesis
ccar00510

Module
ccar_M00072  N-glycosylation by oligosaccharyltransferase [PATH:ccar00510]
ccar_M00073  N-glycan precursor trimming [PATH:ccar00510]
ccar_M00075  N-glycan biosynthesis, complex type [PATH:ccar00510]
Other DBs
GO: 0006487
Organism
Cyprinus carpio (common carp) [GN:ccar]
Gene
109045766  [KO:K23741]
109045768  man1b1a; endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
109046140  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109046469  b4galt1l; LOW QUALITY PROTEIN: beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109047435  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109047982  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
109047987  [KO:K12670]
109048026  [KO:K00717] [EC:2.4.1.68]
109049118  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
109050148  [KO:K00736] [EC:2.4.1.143]
109051056  tmem258; transmembrane protein 258 [KO:K26502]
109051058  [KO:K26502]
109051095  [KO:K01231] [EC:3.2.1.114]
109051404  [KO:K03848] [EC:2.4.1.267]
109052759  [KO:K23741]
109054006  [KO:K09661] [EC:2.4.1.-]
109054759  [KO:K03848] [EC:2.4.1.267]
109055305  [KO:K00779] [EC:2.4.3.1]
109055462  [KO:K12668]
109056956  [KO:K12666]
109057672  mgat3a; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase a [KO:K00737] [EC:2.4.1.144]
109057918  [KO:K03842] [EC:2.4.1.142]
109057945  [KO:K03842] [EC:2.4.1.142]
109058717  [KO:K07432] [EC:2.4.1.141]
109058815  [KO:K00902] [EC:2.7.1.108]
109058949  [KO:K07432] [EC:2.4.1.141]
109059463  [KO:K12667]
109059926  [KO:K00738] [EC:2.4.1.145]
109060144  [KO:K01230] [EC:3.2.1.113]
109060458  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109060830  dpm1; dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
109061037  [KO:K01231] [EC:3.2.1.114]
109063135  [KO:K01230] [EC:3.2.1.113]
109063669  [KO:K03845] [EC:2.4.1.258]
109064225  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109064360  dolk; dolichol kinase [KO:K00902] [EC:2.7.1.108]
109065948  [KO:K00737] [EC:2.4.1.144]
109066287  [KO:K00738] [EC:2.4.1.145]
109066982  srd5a3; polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
109067313  [KO:K03844] [EC:2.4.1.131]
109068405  [KO:K01228] [EC:3.2.1.106]
109069092  [KO:K09661] [EC:2.4.1.-]
109070527  [KO:K05546] [EC:3.2.1.207]
109072175  fut8a; alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
109072336  [KO:K09659]
109072819  [KO:K19478]
109072923  alg10; dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
109073599  [KO:K00721] [EC:2.4.1.83]
109074708  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
109075823  magt1; magnesium transporter protein 1 [KO:K19478]
109075984  [KO:K00738] [EC:2.4.1.145]
109076645  [KO:K01228] [EC:3.2.1.106]
109076718  [KO:K07151] [EC:2.4.99.18]
109077373  [KO:K00736] [EC:2.4.1.143]
109077907  ganaba; neutral alpha-glucosidase AB [KO:K05546] [EC:3.2.1.207]
109078545  man2a1; alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
109079077  zgc:92907; UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
109079660  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
109081650  [KO:K23741]
109083062  [KO:K00779] [EC:2.4.3.1]
109083189  dolpp1; dolichyldiphosphatase 1 [KO:K07252] [EC:3.6.1.43]
109083791  [KO:K00738] [EC:2.4.1.145]
109083982  [KO:K01001] [EC:2.7.8.15]
109084384  dpm2; dolichol phosphate-mannose biosynthesis regulatory protein [KO:K09658]
109084515  [KO:K09658]
109084861  st6gal2b; beta-galactoside alpha-2,6-sialyltransferase 2b [KO:K00779] [EC:2.4.3.1]
109084863  [KO:K12668]
109085392  [KO:K00737] [EC:2.4.1.144]
109087669  [KO:K00744] [EC:2.4.1.155]
109087882  [KO:K00717] [EC:2.4.1.68]
109087893  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109088011  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
109088012  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
109090517  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
109090593  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109090646  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
109090847  [KO:K12666]
109092286  [KO:K09659]
109093804  [KO:K19478]
109093849  [KO:K19478]
109094305  [KO:K11170] [EC:1.1.1.441]
109095143  dhrsx; dehydrogenase/reductase SDR family member on chromosome X isoform X1 [KO:K11170] [EC:1.1.1.441]
109095341  ostc; oligosaccharyltransferase complex subunit ostc [KO:K26501]
109095702  [KO:K00779] [EC:2.4.3.1]
109096686  [KO:K28202]
109097223  alg5; dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
109097417  [KO:K00729] [EC:2.4.1.117]
109097658  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
109098409  [KO:K00726] [EC:2.4.1.101]
109098410  [KO:K00726] [EC:2.4.1.101]
109098747  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
109099101  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109099380  [KO:K00736] [EC:2.4.1.143]
109100200  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109101544  [KO:K05546] [EC:3.2.1.207]
109102391  [KO:K00738] [EC:2.4.1.145]
109102461  [KO:K01230] [EC:3.2.1.113]
109102894  [KO:K00738] [EC:2.4.1.145]
109103367  mgat1a; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a isoform X1 [KO:K00726] [EC:2.4.1.101]
109104885  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109105847  [KO:K00737] [EC:2.4.1.144]
109106057  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109106508  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
109106542  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
109106616  [KO:K07151] [EC:2.4.99.18]
109108968  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109109693  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109110318  [KO:K07151] [EC:2.4.99.18]
109110837  [KO:K00726] [EC:2.4.1.101]
109113239  b4galt2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109113832  [KO:K00717] [EC:2.4.1.68]
122134346  man2a2; alpha-mannosidase 2x [KO:K01231] [EC:3.2.1.114]
122136266  [KO:K03845] [EC:2.4.1.258]
122136274  [KO:K12668]
122139982  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
122140758  [KO:K09659]
122145081  [KO:K03844] [EC:2.4.1.131]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
ccar00051  Fructose and mannose metabolism
ccar00511  Other glycan degradation
ccar00513  Various types of N-glycan biosynthesis
ccar00515  Mannose type O-glycan biosynthesis
ccar00520  Amino sugar and nucleotide sugar metabolism
ccar00533  Glycosaminoglycan biosynthesis - keratan sulfate
ccar00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ccar00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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