KEGG   PATHWAY: dle05340
Entry
dle05340                    Pathway                                
Name
Primary immunodeficiency - Delphinapterus leucas (beluga whale)
Description
Primary immunodeficiencies (PIs) are a heterogeneous group of disorders, which affect cellular and humoral immunity or non-specific host defense mechanisms mediated by complement proteins, and cells such as phagocytes and natural killer (NK) cells. These disorders of the immune system cause increased susceptibility to infection, autoimmune disease, and malignancy. Most of PIs are due to genetic defects that affect cell maturation or function at different levels during hematopoiesis. Disruption of the cellular immunity is observed in patients with defects in T cells or both T and B cells. These cellular immunodeficiencies comprise 20% of all PIs. Disorders of humoral immunity affect B-cell differentiation and antibody production. They account for 70% of all PIs.
Class
Human Diseases; Immune disease
Pathway map
dle05340  Primary immunodeficiency
dle05340

Disease
H01725  Primary immunodeficiency disease
Organism
Delphinapterus leucas (beluga whale) [GN:dle]
Gene
111162817  UNG; uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
111162994  [KO:K06554]
111163553  CIITA; MHC class II transactivator isoform X1 [KO:K08060] [EC:2.7.11.1]
111164543  CD40LG; CD40 ligand [KO:K03161]
111165407  CD8A; T-cell surface glycoprotein CD8 alpha chain isoform X1 [KO:K06458]
111165417  CD8B; T-cell surface glycoprotein CD8 beta chain [KO:K06459]
111166539  RFXANK; DNA-binding protein RFXANK isoform X1 [KO:K08062]
111166590  JAK3; tyrosine-protein kinase JAK3 [KO:K11218] [EC:2.7.10.2]
111166898  CD3E; T-cell surface glycoprotein CD3 epsilon chain [KO:K06451]
111166923  CD3D; T-cell surface glycoprotein CD3 delta chain [KO:K06450]
111167756  TNFRSF13B; tumor necrosis factor receptor superfamily member 13B isoform X1 [KO:K05150]
111167807  IL2RG; cytokine receptor common subunit gamma isoform X1 [KO:K05070]
111168330  PTPRC; receptor-type tyrosine-protein phosphatase C isoform X1 [KO:K06478] [EC:3.1.3.48]
111169773  RFX5; DNA-binding protein RFX5 isoform X1 [KO:K08061]
111170146  CD40; tumor necrosis factor receptor superfamily member 5 isoform X1 [KO:K03160]
111170969  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
111171756  ICOS; inducible T-cell costimulator isoform X1 [KO:K06713]
111172455  BLNK; B-cell linker protein isoform X1 [KO:K07371]
111175071  RFXAP; regulatory factor X-associated protein [KO:K08063]
111175513  LCK; tyrosine-protein kinase Lck [KO:K05856] [EC:2.7.10.2]
111176687  CD4; T-cell surface glycoprotein CD4 [KO:K06454]
111176735  AICDA; single-stranded DNA cytosine deaminase [KO:K10989] [EC:3.5.4.38]
111178088  DCLRE1C; protein artemis isoform X1 [KO:K10887] [EC:3.1.-.-]
111178233  BTK; tyrosine-protein kinase BTK isoform X1 [KO:K07370] [EC:2.7.10.2]
111178659  TAP2; antigen peptide transporter 2 isoform X1 [KO:K05654] [EC:7.4.2.14]
111178660  TAP1; antigen peptide transporter 1 isoform X1 [KO:K05653] [EC:7.4.2.14]
111179768  RAG2; V(D)J recombination-activating protein 2 [KO:K10988]
111179771  RAG1; V(D)J recombination-activating protein 1 [KO:K10628] [EC:2.3.2.27]
111180800  CD79A; B-cell antigen receptor complex-associated protein alpha chain [KO:K06506]
111182200  CD19; B-lymphocyte antigen CD19 isoform X1 [KO:K06465]
111184148  ADA; adenosine deaminase isoform X1 [KO:K01488] [EC:3.5.4.4]
111186205  AIRE; autoimmune regulator [KO:K10603]
111186425  TNFRSF13C; tumor necrosis factor receptor superfamily member 13C isoform X1 [KO:K05151]
111186877  ORAI1; calcium release-activated calcium channel protein 1 [KO:K16056]
111187417  [KO:K07360] [EC:2.7.10.2]
111187554  IL7R; interleukin-7 receptor subunit alpha isoform X1 [KO:K05072]
Reference
  Authors
Cunningham-Rundles C, Ponda PP.
  Title
Molecular defects in T- and B-cell primary immunodeficiency diseases.
  Journal
Nat Rev Immunol 5:880-92 (2005)
DOI:10.1038/nri1713
Reference
  Authors
Ballow M.
  Title
Primary immunodeficiency disorders: antibody deficiency.
  Journal
J Allergy Clin Immunol 109:581-91 (2002)
DOI:10.1067/mai.2002.122466
Reference
  Authors
Marodi L, Notarangelo LD.
  Title
Immunological and genetic bases of new primary immunodeficiencies.
  Journal
Nat Rev Immunol 7:851-61 (2007)
DOI:10.1038/nri2195
Reference
  Authors
Geha RS, Notarangelo LD, Casanova JL, Chapel H, Conley ME, Fischer A, Hammarstrom L, Nonoyama S, Ochs HD, Puck JM, Roifman C, Seger R, Wedgwood J.
  Title
Primary immunodeficiency diseases: an update from the International Union of Immunological Societies Primary Immunodeficiency Diseases Classification Committee.
  Journal
J Allergy Clin Immunol 120:776-94 (2007)
DOI:10.1016/j.jaci.2007.08.053
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases.
  Journal
Immunity 27:835-45 (2007)
DOI:10.1016/j.immuni.2007.11.012
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases: a perspective.
  Journal
Nat Immunol 5:23-30 (2004)
DOI:10.1038/ni1023
Reference
  Authors
Buckley RH.
  Title
Primary immunodeficiency diseases due to defects in lymphocytes.
  Journal
N Engl J Med 343:1313-24 (2000)
DOI:10.1056/NEJM200011023431806
Reference
  Authors
Fischer A, Le Deist F, Hacein-Bey-Abina S, Andre-Schmutz I, Basile Gde S, de Villartay JP, Cavazzana-Calvo M.
  Title
Severe combined immunodeficiency. A model disease for molecular immunology and therapy.
  Journal
Immunol Rev 203:98-109 (2005)
DOI:10.1111/j.0105-2896.2005.00223.x
Reference
  Authors
de Villartay JP, Fischer A, Durandy A.
  Title
The mechanisms of immune diversification and their disorders.
  Journal
Nat Rev Immunol 3:962-72 (2003)
DOI:10.1038/nri1247
Related
pathway
dle04640  Hematopoietic cell lineage
dle04660  T cell receptor signaling pathway
dle04662  B cell receptor signaling pathway
KO pathway
ko05340   

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