KEGG   PATHWAY: dnm04120
Entry
dnm04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Dasypus novemcinctus (nine-banded armadillo)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dnm04120  Ubiquitin mediated proteolysis
dnm04120

Other DBs
GO: 0016567
Organism
Dasypus novemcinctus (nine-banded armadillo) [GN:dnm]
Gene
101411635  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
101411641  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X2 [KO:K13305] [EC:2.3.2.26]
101411867  CDC26; anaphase-promoting complex subunit CDC26 isoform X3 [KO:K03359]
101411899  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
101412024  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
101412187  DDB2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
101412320  [KO:K04551]
101412407  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
101412803  FZR1; fizzy-related protein homolog [KO:K03364]
101413074  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
101413175  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
101413410  CDC23; cell division cycle protein 23 homolog [KO:K03355]
101414011  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
101414395  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
101414539  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
101414615  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
101414655  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
101415116  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
101415135  ELOC; elongin-C [KO:K03872]
101415173  FBXO4; F-box only protein 4 [KO:K10291]
101415205  CUL1; LOW QUALITY PROTEIN: cullin-1 [KO:K03347]
101415901  UBC; polyubiquitin-C [KO:K08770]
101416412  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
101416427  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
101417239  CUL5; cullin-5 [KO:K10612]
101417781  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
101417843  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
101418012  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
101418109  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
101418436  [KO:K03354]
101418463  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
101418752  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X2 [KO:K22517] [EC:2.3.2.27]
101418765  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
101419050  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
101419127  [KO:K10609]
101419751  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
101419852  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
101419876  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
101420729  NEDD4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
101421060  KLHL9; kelch-like protein 9 [KO:K10447]
101421380  CUL2; cullin-2 isoform X1 [KO:K03870]
101421514  AIRE; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
101422302  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
101422559  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
101423262  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
101424014  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
101424570  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
101425186  [KO:K04551]
101425406  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
101425438  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
101425696  [KO:K10595] [EC:2.3.2.26]
101425840  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
101426502  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
101427006  CUL4B; cullin-4B [KO:K10609]
101427228  UBE2C; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
101427524  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
101427801  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
101428003  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
101428084  PIAS2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
101428234  [KO:K16060]
101428397  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
101429094  KEAP1; LOW QUALITY PROTEIN: kelch-like ECH-associated protein 1 [KO:K10456]
101429109  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X2 [KO:K10686] [EC:6.2.1.64]
101429125  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
101429327  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X2 [KO:K05633] [EC:2.3.2.26]
101429422  CDC20; cell division cycle protein 20 homolog [KO:K03363]
101429475  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
101429531  CDC16; cell division cycle protein 16 homolog [KO:K03353]
101429606  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X2 [KO:K06689] [EC:2.3.2.23]
101429650  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
101429895  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
101429945  [KO:K02977]
101430135  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
101430401  [KO:K02927]
101430618  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
101431003  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
101431131  UBOX5; RING finger protein 37 [KO:K10600]
101431149  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
101432131  UBB; polyubiquitin-B [KO:K04551]
101433261  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
101433274  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
101433566  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
101433896  [KO:K02927]
101434303  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
101434452  [KO:K02927]
101434601  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
101435023  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
101435281  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
101435506  [KO:K02927]
101435770  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
101435818  CUL7; LOW QUALITY PROTEIN: cullin-7 [KO:K10613]
101436238  [KO:K10687] [EC:2.3.2.34]
101436408  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
101436910  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
101437149  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
101437302  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
101437368  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
101437683  [KO:K03094]
101437709  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
101438368  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
101438500  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
101438684  CUL3; cullin-3 [KO:K03869]
101439273  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
101439717  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
101439951  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
101439956  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
101439968  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X2 [KO:K06689] [EC:2.3.2.23]
101440415  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
101440475  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
101440679  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
101440790  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
101440826  [KO:K10580] [EC:2.3.2.23]
101441320  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
101441447  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
101441891  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
101441957  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
101442615  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
101443011  FBXW7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
101443099  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
101443555  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
101443691  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
101443738  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
101444027  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
101444172  FBXO2; F-box only protein 2 [KO:K10099]
101444538  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
101444584  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
101444710  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
101444750  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
101444861  ELOB; elongin-B [KO:K03873]
101444896  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
101444960  DDB1; DNA damage-binding protein 1 [KO:K10610]
101445238  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X2 [KO:K10584] [EC:2.3.2.23]
101445554  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
101445592  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
101446437  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
101446517  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
101446968  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
101447179  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
101447210  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
101447215  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
101447288  DET1; DET1 homolog isoform X1 [KO:K10571]
101447405  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
101447642  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
101447966  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
111759830  [KO:K02927]
111760124  UBE2G1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
111764391  [KO:K06689] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dnm03050  Proteasome
KO pathway
ko04120   

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