KEGG   PATHWAY: hmg04120
Entry
hmg04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Hydra vulgaris (swiftwater hydra)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
hmg04120  Ubiquitin mediated proteolysis
hmg04120

Other DBs
GO: 0016567
Organism
Hydra vulgaris (swiftwater hydra) [GN:hmg]
Gene
100203041  polyubiquitin-B [KO:K08770]
100203728  ubiquitin-60S ribosomal protein L40 [KO:K02927]
100210748  ubiquitin-40S ribosomal protein S27a [KO:K02977]
100215063  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100209365  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100209998  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
105848799  NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [KO:K10686] [EC:6.2.1.64]
100202304  ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
100212855  ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100211593  probable ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100207010  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
124807926  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
100212093  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
100203121  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
100211869  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100210376  ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
100214879  ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
100211838  SUMO-conjugating enzyme UBC9 [KO:K10577]
100209881  SUMO-conjugating enzyme UBC9-A [KO:K10577]
100204107  ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
100208424  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100211757  ubiquitin-conjugating enzyme E2-22 kDa [KO:K04649] [EC:2.3.2.23]
100214906  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100198375  NEDD8-conjugating enzyme ubc12 [KO:K10579] [EC:2.3.2.34]
105843532  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100198598  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100203835  (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
100200247  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
100199197  ubiquitin-conjugating enzyme E2 R2-like [KO:K02207] [EC:2.3.2.23]
100209693  ubiquitin-conjugating enzyme E2 S isoform X1 [KO:K10583] [EC:2.3.2.23]
100208384  ubiquitin-conjugating enzyme E2 W-like [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100205089  ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
101237845  ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100198041  ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100213637  E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
100204448  E3 ubiquitin-protein ligase Itchy isoform X1 [KO:K05632] [EC:2.3.2.26]
100199001  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
100208619  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100203526  E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
100207695  E3 ubiquitin-protein ligase UBR5-like [KO:K10593] [EC:2.3.2.26]
100207024  uncharacterized protein LOC100207024 [KO:K10593] [EC:2.3.2.26]
100204164  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
100209320  probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
101239969  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100206462  ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
100210298  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
100198050  RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
100209788  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
101237360  RING finger protein 37-like [KO:K10600]
100205294  protein Mdm4 [KO:K06643] [EC:2.3.2.27]
100208241  E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
101237967  E3 ubiquitin-protein ligase parkin-like isoform X1 [KO:K04556] [EC:2.3.2.31]
100204840  E3 ubiquitin-protein ligase SIAH1A [KO:K04506] [EC:2.3.2.27]
100202032  mitogen-activated protein kinase kinase kinase 1-like isoform X1 [KO:K04416] [EC:2.7.11.25]
100199921  E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
100203779  RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
100211745  E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
101241018  E3 ubiquitin-protein ligase synoviolin B [KO:K10601] [EC:2.3.2.27]
100213455  breast cancer type 1 susceptibility protein homolog isoform X1 [KO:K10605] [EC:2.3.2.27]
100197314  E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
100204043  RING-box protein 1 [KO:K03868] [EC:2.3.2.32]
100206949  cullin-1 [KO:K03347]
100212686  S-phase kinase-associated protein 1 [KO:K03094]
124809314  S-phase kinase-associated protein 1 [KO:K03094]
100199403  F-box/WD repeat-containing protein 11 [KO:K03362]
101236554  S-phase kinase-associated protein 2 [KO:K03875]
100203995  F-box/WD repeat-containing protein 7 [KO:K10260]
101240962  uncharacterized protein LOC101240962 isoform X2 [KO:K10291]
100201574  cullin-2 [KO:K03870]
100210839  elongin-C [KO:K03872]
100198637  elongin-B [KO:K03873]
100202538  cullin-3 [KO:K03869]
100208712  kelch-like ECH-associated protein 1 [KO:K10456]
100202873  rho-related BTB domain-containing protein 1 [KO:K07868]
100199190  cullin-4A [KO:K10609]
100203542  DNA damage-binding protein 1 [KO:K10610]
100205713  DNA excision repair protein ERCC-8 isoform X2 [KO:K10570]
100205652  DET1 homolog [KO:K10571]
100206165  anaphase-promoting complex subunit 11-like [KO:K03358]
101234912  anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
100213570  cell division cycle protein 20 homolog [KO:K03363]
100213681  cell division cycle protein 20 homolog [KO:K03363]
100203201  fizzy-related protein homolog [KO:K03364]
101240980  anaphase-promoting complex subunit 1-like [KO:K03348]
100197596  cell division cycle protein 27 homolog [KO:K03350]
100203849  anaphase-promoting complex subunit 4 [KO:K03351]
101235736  anaphase-promoting complex subunit 5 [KO:K03352]
100204685  anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
100197059  cell division cycle protein 23 homolog [KO:K03355]
105847501  anaphase-promoting complex subunit 10-like [KO:K03357]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
hmg03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system