KEGG   PATHWAY: mmur04120
Entry
mmur04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Microcebus murinus (gray mouse lemur)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mmur04120  Ubiquitin mediated proteolysis
mmur04120

Other DBs
GO: 0016567
Organism
Microcebus murinus (gray mouse lemur) [GN:mmur]
Gene
105854799  ELOC; transcription elongation factor B polypeptide 1 [KO:K03872]
105854801  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105855017  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
105855459  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
105856046  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
105856287  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
105856828  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
105856932  CUL4B; cullin-4B isoform X1 [KO:K10609]
105857153  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
105857160  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
105857193  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
105857801  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
105857926  [KO:K10580] [EC:2.3.2.23]
105858417  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
105858549  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
105858949  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
105859176  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
105859263  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
105859393  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
105859622  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
105859663  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
105859700  ELOB; transcription elongation factor B polypeptide 2 [KO:K03873]
105860109  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
105860330  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
105860521  [KO:K20217] [EC:2.3.2.23]
105860526  [KO:K20217] [EC:2.3.2.23]
105860543  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
105860598  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
105860713  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
105860844  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
105861233  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105861697  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
105861946  UBB; polyubiquitin-B [KO:K04551]
105862152  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
105862405  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
105862491  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
105862495  CDC23; LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [KO:K03355]
105862821  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
105862845  CUL3; cullin-3 [KO:K03869]
105862992  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
105863161  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
105863303  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
105863616  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
105863670  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
105864498  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
105865216  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
105865419  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
105865825  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
105866037  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
105866404  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
105866738  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
105866882  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
105866908  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
105868079  [KO:K10594] [EC:2.3.2.26]
105868303  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
105868794  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
105868815  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
105869051  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
105869297  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
105869505  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
105869583  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
105869824  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
105869977  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
105869978  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
105870045  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
105870172  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
105870234  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
105870264  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
105870282  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
105871629  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
105871854  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
105871895  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
105871909  CUL4A; cullin-4A [KO:K10609]
105871977  CUL2; cullin-2 [KO:K03870]
105872046  [KO:K04552] [EC:2.3.2.23]
105872804  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
105872816  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X2 [KO:K10584] [EC:2.3.2.23]
105873007  [KO:K04551]
105873201  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
105873323  CUL1; cullin-1 [KO:K03347]
105873437  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
105873671  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105873707  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
105873891  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
105873892  [KO:K06689] [EC:2.3.2.23]
105873941  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
105873998  FZR1; fizzy-related protein homolog [KO:K03364]
105874188  KLHL9; kelch-like protein 9 [KO:K10447]
105874362  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
105874569  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
105874570  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
105874813  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
105874966  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
105875734  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
105875829  CUL7; cullin-7 isoform X1 [KO:K10613]
105876050  UBE4A; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
105876096  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
105876146  CUL5; cullin-5 [KO:K10612]
105876358  [KO:K10614] [EC:2.3.2.26]
105876567  WWP1; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
105876965  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
105877065  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
105877262  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
105877272  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
105877421  CDC20; cell division cycle protein 20 homolog [KO:K03363]
105877639  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
105877788  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
105877792  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 isoform X1 [KO:K10598] [EC:5.2.1.8]
105878030  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
105878383  FBXO4; F-box only protein 4 [KO:K10291]
105878428  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105878510  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
105878638  DDB1; DNA damage-binding protein 1 [KO:K10610]
105878648  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
105878974  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
105879079  AIRE; autoimmune regulator [KO:K10603]
105879155  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
105879653  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
105880640  [KO:K03354]
105880834  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
105880847  [KO:K02927]
105880913  ANAPC5; anaphase-promoting complex subunit 5 isoform X3 [KO:K03352]
105881053  [KO:K06689] [EC:2.3.2.23]
105881413  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
105881811  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
105881854  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
105882169  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
105882248  [KO:K03349]
105882329  [KO:K10580] [EC:2.3.2.23]
105882429  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
105882448  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
105882723  FBXO2; F-box only protein 2 [KO:K10099]
105882826  [KO:K03872]
105883008  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
105883124  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
105884074  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
105884225  [KO:K10580] [EC:2.3.2.23]
105884475  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
105884627  [KO:K06643] [EC:2.3.2.27]
105884703  DET1; DET1 homolog isoform X1 [KO:K10571]
105884763  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
105884857  DDB2; DNA damage-binding protein 2 [KO:K10140]
105884864  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
105884950  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
105885082  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
105885588  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
105885785  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
105886029  UBE4B; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mmur03050  Proteasome
KO pathway
ko04120   

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