KEGG   PATHWAY: nfi03040
Entry
nfi03040                    Pathway                                
Name
Spliceosome - Aspergillus fischeri
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
nfi03040  Spliceosome
nfi03040

Other DBs
GO: 0005681
PDB: 5O9Z 5Z56 6FF7 8I0W
Organism
Aspergillus fischeri [GN:nfi]
Gene
NFIA_003540  [KO:K12836]
NFIA_008390  [KO:K12817]
NFIA_011120  [KO:K12626]
NFIA_011410  [KO:K12848]
NFIA_011580  [KO:K12843]
NFIA_013870  [KO:K12627]
NFIA_014670  [KO:K12877]
NFIA_014930  [KO:K12862]
NFIA_015360  [KO:K12821]
NFIA_015450  [KO:K12869]
NFIA_015460  [KO:K12844]
NFIA_015590  [KO:K12811] [EC:5.6.2.7]
NFIA_016230  [KO:K12871]
NFIA_017310  [KO:K03283]
NFIA_018240  [KO:K12861]
NFIA_019040  [KO:K12832]
NFIA_020850  [KO:K12815] [EC:5.6.2.6]
NFIA_025250  [KO:K12624]
NFIA_026520  [KO:K12837]
NFIA_027220  [KO:K11097]
NFIA_029020  [KO:K12874]
NFIA_029030  [KO:K12878]
NFIA_029780  [KO:K12872]
NFIA_030300  [KO:K13106]
NFIA_035380  [KO:K12856]
NFIA_035610  [KO:K12876]
NFIA_037640  [KO:K12829]
NFIA_039060  [KO:K06063]
NFIA_039500  [KO:K28527]
NFIA_039660  [KO:K12827]
NFIA_039670  [KO:K13025] [EC:5.6.2.7]
NFIA_048350  [KO:K12733] [EC:5.2.1.8]
NFIA_048940  [KO:K12812] [EC:5.6.2.7]
NFIA_050700  [KO:K12846]
NFIA_051700  [KO:K12882]
NFIA_051760  [KO:K12831]
NFIA_051930  [KO:K12625]
NFIA_052140  [KO:K11094]
NFIA_052820  [KO:K13174]
NFIA_052980  [KO:K12816]
NFIA_055670  [KO:K12839]
NFIA_059370  [KO:K12830]
NFIA_065000  [KO:K12859]
NFIA_065770  [KO:K13108]
NFIA_066410  [KO:K13095]
NFIA_066830  [KO:K12842]
NFIA_070480  [KO:K12819]
NFIA_070830  [KO:K12825]
NFIA_073070  [KO:K12881]
NFIA_073550  [KO:K10599] [EC:2.3.2.27]
NFIA_073580  [KO:K11093]
NFIA_074170  [KO:K11096]
NFIA_074640  [KO:K12622]
NFIA_075390  [KO:K12867]
NFIA_075650  [KO:K12820] [EC:5.6.2.6]
NFIA_076260  [KO:K11092]
NFIA_076400  [KO:K12818] [EC:5.6.2.6]
NFIA_078250  [KO:K12849]
NFIA_078590  [KO:K12870]
NFIA_078760  [KO:K13107]
NFIA_078970  [KO:K12881]
NFIA_080080  [KO:K12879]
NFIA_081830  [KO:K11087]
NFIA_082260  [KO:K12860]
NFIA_082670  [KO:K12845]
NFIA_082680  [KO:K12833]
NFIA_082840  [KO:K12855]
NFIA_083430  [KO:K12813] [EC:5.6.2.6]
NFIA_084190  [KO:K12883]
NFIA_084450  [KO:K12863]
NFIA_085730  [KO:K28450]
NFIA_086090  [KO:K12823] [EC:5.6.2.7]
NFIA_087200  [KO:K12623]
NFIA_088960  [KO:K12828]
NFIA_090460  [KO:K12621]
NFIA_090730  [KO:K11098]
NFIA_096590  [KO:K09567] [EC:5.2.1.8]
NFIA_096640  [KO:K03283]
NFIA_096690  [KO:K12852]
NFIA_097390  [KO:K12662]
NFIA_097520  [KO:K12854] [EC:5.6.2.6]
NFIA_097770  [KO:K11099]
NFIA_102990  [KO:K11095]
NFIA_104070  [KO:K12880]
NFIA_104350  [KO:K12826]
NFIA_105650  [KO:K11984]
NFIA_105810  [KO:K11088]
NFIA_106250  [KO:K12868]
NFIA_107150  [KO:K12858] [EC:5.6.2.7]
NFIA_108430  [KO:K11086]
NFIA_108650  [KO:K28512]
NFIA_108690  [KO:K12847]
NFIA_109400  [KO:K12840]
NFIA_114640  [KO:K12864]
NFIA_115000  [KO:K12857]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
Reference
  Authors
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
  Journal
Cell 170:701-713.e11 (2017)
DOI:10.1016/j.cell.2017.07.011
Reference
  Authors
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y
  Title
Structure of the human activated spliceosome in three conformational states.
  Journal
Cell Res 28:307-322 (2018)
DOI:10.1038/cr.2018.14
Reference
  Authors
Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.
  Journal
Cell 172:454-464.e11 (2018)
DOI:10.1016/j.cell.2018.01.010
Reference
  Authors
Zhan X, Lu Y, Shi Y
  Title
Molecular basis for the activation of human spliceosome.
  Journal
Nat Commun 15:6348 (2024)
DOI:10.1038/s41467-024-50785-0
KO pathway
ko03040   

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