KEGG   PATHWAY: one00510
Entry
one00510                    Pathway                                
Name
N-Glycan biosynthesis - Oncorhynchus nerka (sockeye salmon)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
one00510  N-Glycan biosynthesis
one00510

Module
one_M00072  N-glycosylation by oligosaccharyltransferase [PATH:one00510]
one_M00073  N-glycan precursor trimming [PATH:one00510]
one_M00075  N-glycan biosynthesis, complex type [PATH:one00510]
Other DBs
GO: 0006487
Organism
Oncorhynchus nerka (sockeye salmon) [GN:one]
Gene
115101346  [KO:K05546] [EC:3.2.1.207]
115101612  [KO:K00721] [EC:2.4.1.83]
115101978  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
115102263  [KO:K12670]
115102851  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform X1 [KO:K03845] [EC:2.4.1.258]
115103087  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115103797  [KO:K09661] [EC:2.4.1.-]
115104299  [KO:K09661] [EC:2.4.1.-]
115104926  [KO:K00726] [EC:2.4.1.101]
115105038  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
115105343  [KO:K01230] [EC:3.2.1.113]
115105571  [KO:K07151] [EC:2.4.99.18]
115105938  [KO:K01231] [EC:3.2.1.114]
115106807  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
115106811  [KO:K00778] [EC:2.4.3.1]
115106856  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
115106868  [KO:K03850] [EC:2.4.1.256]
115107726  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
115107821  [KO:K00736] [EC:2.4.1.143]
115107907  [KO:K00717] [EC:2.4.1.68]
115107970  [KO:K00736] [EC:2.4.1.143]
115108468  [KO:K12668]
115108663  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
115108992  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
115109522  man2a2; alpha-mannosidase 2x isoform X1 [KO:K01231] [EC:3.2.1.114]
115109671  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
115110123  [KO:K00737] [EC:2.4.1.144]
115110124  [KO:K00737] [EC:2.4.1.144]
115110655  [KO:K09661] [EC:2.4.1.-]
115111439  [KO:K23741]
115112303  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
115113127  [KO:K00738] [EC:2.4.1.145]
115114420  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115115430  [KO:K00717] [EC:2.4.1.68]
115115536  dolk; dolichol kinase isoform X1 [KO:K00902] [EC:2.7.1.108]
115115583  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
115115648  alg9; alpha-1,2-mannosyltransferase ALG9 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
115115804  [KO:K03844] [EC:2.4.1.131]
115115907  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
115116044  [KO:K00737] [EC:2.4.1.144]
115116662  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115116883  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115117026  [KO:K00726] [EC:2.4.1.101]
115117282  [KO:K00779] [EC:2.4.3.1]
115118672  [KO:K12667]
115118840  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform X1 [KO:K00738] [EC:2.4.1.145]
115118961  [KO:K28202]
115119249  [KO:K00736] [EC:2.4.1.143]
115119414  [KO:K09658]
115119579  dolpp1; dolichyldiphosphatase 1 isoform X1 [KO:K07252] [EC:3.6.1.43]
115119692  magt1; magnesium transporter protein 1 [KO:K19478]
115121265  alg5; dolichyl-phosphate beta-glucosyltransferase isoform X1 [KO:K00729] [EC:2.4.1.117]
115122029  [KO:K28202]
115122625  [KO:K26502]
115122670  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
115123753  [KO:K26502]
115124626  [KO:K03845] [EC:2.4.1.258]
115124760  ost4; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 [KO:K00730]
115125434  [KO:K00779] [EC:2.4.3.1]
115125615  [KO:K07432] [EC:2.4.1.141]
115126306  [KO:K28202]
115126674  [KO:K01231] [EC:3.2.1.114]
115128231  [KO:K07151] [EC:2.4.99.18]
115128576  [KO:K01230] [EC:3.2.1.113]
115128742  [KO:K00726] [EC:2.4.1.101]
115129232  [KO:K05546] [EC:3.2.1.207]
115129449  [KO:K00738] [EC:2.4.1.145]
115129493  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115129533  [KO:K00738] [EC:2.4.1.145]
115129624  [KO:K03844] [EC:2.4.1.131]
115129626  [KO:K00744] [EC:2.4.1.155]
115129679  [KO:K11170] [EC:1.1.1.441]
115129715  [KO:K00779] [EC:2.4.3.1]
115130678  [KO:K00738] [EC:2.4.1.145]
115130741  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115130791  [KO:K00738] [EC:2.4.1.145]
115130934  [KO:K05546] [EC:3.2.1.207]
115131013  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
115131359  [KO:K01230] [EC:3.2.1.113]
115131752  [KO:K07151] [EC:2.4.99.18]
115131782  dpm3; dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
115132243  [KO:K12670]
115132806  dpm1; dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
115133197  [KO:K00779] [EC:2.4.3.1]
115133295  [KO:K26501]
115133741  [KO:K03850] [EC:2.4.1.256]
115133823  [KO:K11170] [EC:1.1.1.441]
115133953  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
115134299  [KO:K00744] [EC:2.4.1.155]
115135394  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
115135472  [KO:K07432] [EC:2.4.1.141]
115135887  [KO:K07151] [EC:2.4.99.18]
115136867  [KO:K12667]
115137269  mogs; mannosyl-oligosaccharide glucosidase isoform X1 [KO:K01228] [EC:3.2.1.106]
115137371  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115137545  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
115138070  [KO:K12666]
115138225  [KO:K26501]
115138729  [KO:K00717] [EC:2.4.1.68]
115139349  [KO:K00736] [EC:2.4.1.143]
115139444  [KO:K01230] [EC:3.2.1.113]
115139862  [KO:K23741]
115141151  [KO:K00726] [EC:2.4.1.101]
115141165  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
115141202  [KO:K01230] [EC:3.2.1.113]
115142587  [KO:K09661] [EC:2.4.1.-]
115143334  [KO:K12666]
115145132  srd5a3; polyprenol reductase isoform X1 [KO:K12345] [EC:1.3.1.22 1.3.1.94]
115145480  [KO:K12668]
115145961  [KO:K00717] [EC:2.4.1.68]
115147101  [KO:K09658]
115147107  [KO:K07252] [EC:3.6.1.43]
115147146  [KO:K23741]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
one00051  Fructose and mannose metabolism
one00511  Other glycan degradation
one00513  Various types of N-glycan biosynthesis
one00515  Mannose type O-glycan biosynthesis
one00520  Amino sugar and nucleotide sugar metabolism
one00533  Glycosaminoglycan biosynthesis - keratan sulfate
one00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
one00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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