KEGG   PATHWAY: osa03010
Entry
osa03010                    Pathway                                
Name
Ribosome - Oryza sativa japonica (Japanese rice)
Class
Genetic Information Processing; Translation
Pathway map
osa03010  Ribosome
osa03010

Other DBs
PDB: 1FFK 1J5E 4V4A 4YBB 4V6U 4V6X 4UG0 4V88 3A1Y
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
107275423  [KO:K02943]
107275870  [KO:K02964]
107276117  [KO:K02943]
107276303  [KO:K02871]
107276598  [KO:K02929]
107276599  [KO:K02929]
107276998  [KO:K02998]
107277301  [KO:K02978]
107277317  [KO:K02927]
107277419  [KO:K02866]
107277614  [KO:K02977]
107278854  [KO:K02886]
107278968  [KO:K02992]
107279592  [KO:K02950]
107280605  [KO:K02886]
107280606  [KO:K02886]
107280672  [KO:K02992]
107281219  [KO:K02946]
107281656  [KO:K02929]
107281766  [KO:K02992]
107281913  [KO:K02886]
107282054  [KO:K02992]
112937410  [KO:K02982]
112937435  [KO:K02982]
112937968  [KO:K02992]
112938705  [KO:K02992]
112938758  [KO:K02992]
136351123  [KO:K02913]
136351794  [KO:K02927]
3131364  OrsajCr113; 16S ribosomal RNA [KO:K26195]
3131367  OrsajCr114; 23S ribosomal RNA [KO:K26196]
3131368  OrsajCr115; 4.5S ribosomal RNA [KO:K01984]
3131369  OrsajCr116; 5S ribosomal RNA [KO:K28351]
3131375  OrsajCr117; 5S ribosomal RNA [KO:K28351]
3131376  OrsajCr118; 4.5S ribosomal RNA [KO:K01984]
3131377  OrsajCr119; 23S ribosomal RNA [KO:K26196]
3131380  OrsajCr120; 16S ribosomal RNA [KO:K26195]
3131385  rps12; ribosomal protein S12 [KO:K02950]
3131421  rpl2; ribosomal protein L2 [KO:K02886]
3131422  rpl14; ribosomal protein L14 [KO:K02874]
3131423  rpl16; ribosomal protein L16 [KO:K02878]
3131424  rpl2; ribosomal protein L2 [KO:K02886]
3131425  rpl20; ribosomal protein L20 [KO:K02887]
3131426  rpl22; ribosomal protein L22 [KO:K02890]
3131427  rpl23; ribosomal protein L23 [KO:K02892]
3131428  rpl23; ribosomal protein L23 [KO:K02892]
3131429  rpl33; ribosomal protein L33 [KO:K02913]
3131430  rpl36; ribosomal protein L36 [KO:K02919]
3131435  rps11; ribosomal protein S11 [KO:K02948]
3131436  rps14; ribosomal protein S14 [KO:K02954]
3131437  rps15; ribosomal protein S15 [KO:K02956]
3131438  rps15; ribosomal protein S15 [KO:K02956]
3131439  rps16; ribosomal protein S16 [KO:K02959]
3131440  rps18; ribosomal protein S18 [KO:K02963]
3131441  rps19; ribosomal protein S19 [KO:K02965]
3131442  rps2; ribosomal protein S2 [KO:K02967]
3131443  rps3; ribosomal protein S3 [KO:K02982]
3131444  rps7; ribosomal protein S7 [KO:K02992]
3131445  rps7; ribosomal protein S7 [KO:K02992]
3131446  rps8; ribosomal protein S8 [KO:K02994]
3131457  rps4; ribosomal protein S4 [KO:K02986]
3131486  rpl32; ribosomal protein L32 [KO:K02911]
3131499  rps12; ribosomal protein S12 [KO:K02950]
4323904  [KO:K02905]
4323991  [KO:K02896]
4324115  GPB-LR; small ribosomal subunit protein RACK1z [KO:K14753]
4324162  [KO:K02887]
4324275  [KO:K19034]
4324441  OsJ_01280; large ribosomal subunit protein eL30 [KO:K02908]
4324446  [KO:K02945]
4324553  [KO:K02947]
4324645  [KO:K02990]
4324671  [KO:K02974]
4325065  [KO:K02865]
4325100  RPL5; large ribosomal subunit protein uL18z [KO:K02932]
4325273  ASL1; Albino Seedling Lethal1 [KO:K02968]
4325282  OsJ_03011; large ribosomal subunit protein eL43z [KO:K02921]
4325316  [KO:K02948]
4325478  [KO:K02898]
4325555  [KO:K02871]
4325892  [KO:K28397]
4326022  [KO:K02987]
4326350  [KO:K02914]
4326383  [KO:K02897]
4326457  [KO:K02989]
4326469  [KO:K02893]
4326593  [KO:K02909]
4326653  [KO:K02890]
4326782  [KO:K02943]
4326865  [KO:K02882]
4326977  OsJ_01558; ubiquitin-ribosomal protein eS31z fusion protein [KO:K02977]
4327004  OsJ_03475; large ribosomal subunit protein eL20 [KO:K02882]
4327087  [KO:K02868]
4327104  [KO:K02906]
4327257  CL27; large ribosomal subunit protein bL27c [KO:K02899]
4327382  [KO:K02879]
4327391  [KO:K02920]
4327414  P0506B12.5; 40S ribosomal protein S23 [KO:K02973]
4327483  [KO:K02896]
4327541  [KO:K02914]
4327570  OsJ_03907; small ribosomal subunit protein eS26 [KO:K02976]
4327587  [KO:K02908]
4327674  [KO:K02903]
4327965  [KO:K27351]
4327989  [KO:K02988]
4327999  [KO:K02940]
4328016  RPS4; small ribosomal subunit protein eS4 [KO:K02987]
4328048  [KO:K02922]
4328236  [KO:K02906]
4328392  [KO:K02955]
4328472  [KO:K02900]
4328635  [KO:K02935]
4328797  [KO:K02974]
4328826  [KO:K02868]
4328914  [KO:K02957]
4328932  [KO:K02888]
4329028  [KO:K17434]
4329034  [KO:K02901]
4329042  [KO:K02984]
4329171  [KO:K02865]
4329361  [KO:K02957]
4329362  [KO:K02978]
4329381  OsJ_06781; small ribosomal subunit protein eS8 [KO:K02995]
4329423  [KO:K02918]
4329540  [KO:K02943]
4329563  [KO:K02955]
4329619  OsJ_07087; small ribosomal subunit protein eS10z [KO:K02947]
4329831  [KO:K02934]
4329997  [KO:K17422]
4330020  [KO:K02875]
4330309  [KO:K02953]
4330370  [KO:K02881]
4330425  [KO:K02870]
4330533  [KO:K02910]
4330763  [KO:K02904]
4330946  [KO:K02917]
4331011  OsJ_08725; large ribosomal subunit protein eL39z [KO:K02924]
4331014  OsJ_08727; large ribosomal subunit protein eL39y [KO:K02924]
4331122  [KO:K02894]
4331176  [KO:K02903]
4331189  [KO:K02939]
4331346  [KO:K02962]
4331442  [KO:K02867]
4331459  rpl5; large ribosomal subunit protein uL5c [KO:K02931]
4331562  [KO:K02894]
4331662  [KO:K02997]
4331742  [KO:K02979]
4331759  [KO:K02911]
4331942  [KO:K02946]
4331966  CYC07; small ribosomal subunit protein eS1 [KO:K02984]
4332089  [KO:K02876]
4332169  OJ1175C11.2; ubiquitin-ribosomal protein eL40z fusion protein [KO:K02927]
4332257  [KO:K02969]
4332312  [KO:K02927]
4332348  [KO:K02926]
4332466  [KO:K02864]
4332545  [KO:K02993]
4332546  [KO:K02993]
4332652  [KO:K02945]
4332773  [KO:K02885]
4332793  [KO:K02883]
4332802  [KO:K02891]
4332813  RPS21; small ribosomal subunit protein eS21 [KO:K02971]
4332868  [KO:K02933]
4332994  [KO:K02948]
4333016  [KO:K02991]
4333083  [KO:K02900]
4333148  [KO:K02966]
4333150  [KO:K02966]
4333233  [KO:K02988]
4333306  [KO:K02873]
4333308  [KO:K02985]
4333317  [KO:K02885]
4333387  [KO:K02877]
4333672  [KO:K02971]
4333797  [KO:K02970]
4333848  [KO:K02952]
4333960  [KO:K02933]
4334016  [KO:K02935]
4334131  [KO:K02933]
4334154  [KO:K02872]
4334247  [KO:K02996]
4334407  [KO:K02964]
4334438  [KO:K02958]
4334512  [KO:K02981]
4334544  [KO:K02919]
4334555  [KO:K02879]
4334580  [KO:K02973]
4334651  CL18; large ribosomal subunit protein uL18c [KO:K02881]
4334749  [KO:K02990]
4335476  [KO:K02899]
4335531  [KO:K02978]
4335547  [KO:K02995]
4335607  [KO:K02918]
4335791  [KO:K02955]
4335865  OsJ_14842; 40S ribosomal protein S10-2 [KO:K02947]
4336056  [KO:K19032]
4336140  [KO:K02934]
4336307  [KO:K02893]
4336317  [KO:K02949]
4336397  [KO:K02875]
4336856  [KO:K02870]
4336914  [KO:K02937]
4336975  [KO:K02949]
4336976  [KO:K02949]
4337506  CS17; small ribosomal subunit protein uS17c [KO:K02961]
4337526  [KO:K02902]
4337653  [KO:K02864]
4337808  [KO:K17411]
4337849  [KO:K02883]
4337883  OsJ_17209; ubiquitin-ribosomal protein eS31y fusion protein [KO:K02977]
4337928  QM1; large ribosomal subunit protein uL16y [KO:K02866]
4338005  [KO:K19033]
4338077  OsJ_17505; large ribosomal subunit protein uL5 [KO:K02868]
4338198  [KO:K02871]
4338199  [KO:K02871]
4338257  [KO:K02897]
4338485  B1164G01.3; small ribosomal subunit protein eS7 [KO:K02993]
4338517  [KO:K02905]
4338571  [KO:K02987]
4338667  [KO:K02863]
4338938  [KO:K02943]
4339011  [KO:K02920]
4339018  [KO:K02879]
4339104  [KO:K02976]
4339145  [KO:K02896]
4339162  [KO:K02908]
4339261  [KO:K02923]
4339398  [KO:K02887]
4339400  [KO:K02939]
4339443  [KO:K02945]
4339475  [KO:K02903]
4339539  GPB-LR; small ribosomal subunit protein RACK1y [KO:K14753]
4339552  [KO:K02935]
4339572  [KO:K02917]
4339573  [KO:K02921]
4339580  [KO:K02888]
4339625  [KO:K02882]
4339648  [KO:K02935]
4339923  [KO:K02873]
4339986  [KO:K17428]
4340027  OsJ_20022; small ribosomal subunit protein uS10 [KO:K02969]
4340273  [KO:K02983]
4340823  [KO:K17427]
4340887  [KO:K02910]
4340949  [KO:K02907]
4341262  [KO:K02868]
4341282  [KO:K02974]
4341664  [KO:K02916]
4341869  P0009H10.6; 50S ribosomal protein L24, chloroplastic [KO:K02895]
4341969  P0596H10.6; large ribosomal subunit protein P3 [KO:K28397]
4342219  [KO:K02872]
4342408  [KO:K02951]
4342526  [KO:K02964]
4342563  [KO:K02930]
4342580  RPS15; small ribosomal subunit protein uS19 [KO:K02958]
4342672  [KO:K17408]
4342695  [KO:K02981]
4342697  [KO:K02957]
4342748  [KO:K02896]
4342771  [KO:K02951]
4342953  [KO:K02896]
4343020  [KO:K02892]
4343124  [KO:K02929]
4343261  [KO:K02927]
4343416  [KO:K02929]
4343516  [KO:K02902]
4343529  [KO:K02923]
4343620  [KO:K02949]
4343679  [KO:K02953]
4343869  [KO:K02985]
4343884  [KO:K02900]
4343909  [KO:K02998]
4343945  [KO:K02991]
4343966  [KO:K02935]
4344108  [KO:K17426]
4344162  [KO:K02996]
4344261  [KO:K02891]
4344265  [KO:K02883]
4344476  [KO:K02907]
4344516  [KO:K02942]
4344523  [KO:K02953]
4344524  OsJ_25831; small ribosomal subunit protein uS15y [KO:K02953]
4344579  [KO:K02922]
4344590  60SP0; large ribosomal subunit protein uL10 [KO:K02941]
4344696  [KO:K02915]
4344935  [KO:K02949]
4345009  [KO:K02937]
4345238  [KO:K02876]
4345279  RPL7A-1; large ribosomal subunit protein eL8z [KO:K02936]
4345370  [KO:K02961]
4345523  [KO:K02899]
4345669  [KO:K02915]
4345976  [KO:K02910]
4346021  [KO:K17413]
4346044  [KO:K02959]
4346086  [KO:K02912]
4346123  [KO:K02880]
4346195  [KO:K02937]
4346314  [KO:K02975]
4346540  [KO:K02880]
4347232  [KO:K02927]
4347411  [KO:K02927]
4347422  OsJ_29817; large ribosomal subunit protein uL6 [KO:K02940]
4347467  [KO:K02959]
4347487  [KO:K02912]
4347488  [KO:K02912]
4347522  OsJ_29953; large ribosomal subunit protein eL8y [KO:K02936]
4347646  OsJ_30086; small ribosomal subunit protein bTHXm [KO:K19033]
4347896  UBQ2; ubiquitin-ribosomal protein eL40y fusion protein [KO:K02927]
4347899  [KO:K02975]
4348185  [KO:K02969]
4348383  [KO:K02973]
4348590  [KO:K02911]
4348607  [KO:K02979]
4348608  [KO:K02962]
4348839  [KO:K02889]
4348843  [KO:K02867]
4348846  [KO:K02894]
4348935  [KO:K02881]
4349409  [KO:K02901]
4349653  [KO:K02960]
4349726  [KO:K02895]
4349791  [KO:K02898]
4349810  [KO:K02975]
4349878  [KO:K02925]
4350098  SC34; large ribosomal subunit protein uL16z [KO:K02866]
4350406  [KO:K02923]
4350516  [KO:K02989]
4350706  [KO:K19035]
4350797  [KO:K02926]
4350869  [KO:K02997]
4350976  [KO:K02980]
4351374  [KO:K02960]
4351443  [KO:K02895]
4351513  [KO:K02898]
4351604  RPL3; large ribosomal subunit protein uL3 [KO:K02925]
4351768  [KO:K17402]
4351876  [KO:K17435]
4352048  [KO:K02984]
4352308  [KO:K02980]
4352353  [KO:K02946]
4352560  [KO:K02938]
4352797  [KO:K02874]
6450135  rps19; ribosomal protein S19 [KO:K02965]
6450136  rrn5; 5S ribosomal RNA [KO:K28346]
6450145  rrn26; 26S ribosomal RNA [KO:K26194]
6450151  rps7; ribosomal protein S7 [KO:K02992]
6450166  rps2; ribosomal protein S2 [KO:K02967]
6450167  rrn18; 18S ribosomal RNA [KO:K26193]
6450179  rps4; ribosomal protein S4 [KO:K02986]
6450193  rps13; ribosomal protein S13 [KO:K02952]
6450196  rps3; ribosomal protein S3 [KO:K02982]
6450201  rps12; ribosomal protein S12 [KO:K02950]
9266027  [KO:K02941]
9266128  [KO:K17424]
9266191  OsJ_28271; large ribosomal subunit protein uL1 [KO:K02865]
9266412  [KO:K02889]
9266509  P0506B12.6; 40S ribosomal protein S23 [KO:K02973]
9266562  [KO:K02877]
9266960  [KO:K02929]
9267266  [KO:K02980]
9267671  [KO:K02915]
9267955  [KO:K02922]
9268088  [KO:K02997]
9268174  [KO:K02943]
9268245  [KO:K02865]
9268459  OsJ_20351; large ribosomal subunit protein eL39x [KO:K02924]
9268508  [KO:K02912]
9269245  [KO:K02933]
9269338  [KO:K02997]
9270965  [KO:K02941]
9271228  [KO:K02899]
9271252  al1; large ribosomal subunit protein bL12c [KO:K02935]
9271697  [KO:K02949]
9271790  [KO:K02917]
9271813  [KO:K02929]
9271934  OsJ_04400; large ribosomal subunit protein uL18y [KO:K02932]
9272225  [KO:K02998]
9272265  [KO:K02983]
9272292  [KO:K02897]
9272428  [KO:K02884]
9272589  [KO:K02930]
Reference
PMID:10476961
  Authors
Ban N, Nissen P, Hansen J, Capel M, Moore PB, Steitz TA.
  Title
Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit.
  Journal
Nature 400:841-847 (1999)
DOI:10.1038/23641
Reference
PMID:10476960
  Authors
Clemons WM Jr, May JL, Wimberly BT, McCutcheon JP, Capel MS, Ramakrishnan V.
  Title
Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.
  Journal
Nature 400:833-840 (1999)
DOI:10.1038/23631
Reference
PMID:10497122
  Authors
Cate JH, Yusupov MM, Yusupova GZ, Earnest TN, Noller HF.
  Title
X-ray crystal structures of 70S ribosome functional complexes.
  Journal
Science 285:2095-2104 (1999)
DOI:10.1126/science.285.5436.2095
Reference
PMID:10937989
  Authors
Ban N, Nissen P, Hansen J, Moore PB, Steitz TA.
  Title
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
  Journal
Science 289:905-920 (2000)
DOI:10.1126/science.289.5481.905
Reference
PMID:10937990
  Authors
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA.
  Title
The structural basis of ribosome activity in peptide bond synthesis.
  Journal
Science 289:920-930 (2000)
DOI:10.1126/science.289.5481.920
Reference
PMID:11014182
  Authors
Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V.
  Title
Structure of the 30S ribosomal subunit.
  Journal
Nature 407:327-339 (2000)
DOI:10.1038/35030006
Reference
PMID:11014183
  Authors
Carter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V.
  Title
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.
  Journal
Nature 407:340-348 (2000)
DOI:10.1038/35030019
Reference
PMID:25775265
  Authors
Noeske J, Wasserman MR, Terry DS, Altman RB, Blanchard SC, Cate JH
  Title
High-resolution structure of the Escherichia coli ribosome.
  Journal
Nat Struct Mol Biol 22:336-41 (2015)
DOI:10.1038/nsmb.2994
Reference
PMID:23222135
  Authors
Armache JP, Anger AM, Marquez V, Franckenberg S, Frohlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN
  Title
Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
  Journal
Nucleic Acids Res 41:1284-93 (2013)
DOI:10.1093/nar/gks1259
Reference
PMID:23636399
  Authors
Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R
  Title
Structures of the human and Drosophila 80S ribosome.
  Journal
Nature 497:80-5 (2013)
DOI:10.1038/nature12104
Reference
PMID:25901680
  Authors
Khatter H, Myasnikov AG, Natchiar SK, Klaholz BP
  Title
Structure of the human 80S ribosome.
  Journal
Nature 520:640-5 (2015)
DOI:10.1038/nature14427
Reference
PMID:20007716
  Authors
Naganuma T, Nomura N, Yao M, Mochizuki M, Uchiumi T, Tanaka I
  Title
Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes.
  Journal
J Biol Chem 285:4747-56 (2010)
DOI:10.1074/jbc.M109.068098
KO pathway
ko03010   

DBGET integrated database retrieval system