KEGG   PATHWAY: ifu03082
Entry
ifu03082                    Pathway                                
Name
ATP-dependent chromatin remodeling - Ictalurus furcatus (blue catfish)
Class
Genetic Information Processing; Chromosome
Pathway map
ifu03082  ATP-dependent chromatin remodeling
ifu03082

Organism
Ictalurus furcatus (blue catfish) [GN:ifu]
Gene
128606059  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
128612260  baz1a; bromodomain adjacent to zinc finger domain protein 1A isoform X1 [KO:K11655]
128606964  baz1b; tyrosine-protein kinase BAZ1B isoform X1 [KO:K11658]
128619885  baz2a; bromodomain adjacent to zinc finger domain protein 2A isoform X1 [KO:K15224]
128608932  bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
128615678  baz2ba; bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
128600560  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
128603401  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
128619975  rsf1b.1; remodeling and spacing factor 1 isoform X1 [KO:K11657]
128606915  rsf1a; remodeling and spacing factor 1 [KO:K11657]
128603770  smarca1; probable global transcription activator SNF2L1 isoform X1 [KO:K11727] [EC:5.6.2.-]
128615388  nucleosome-remodeling factor subunit BPTF-like isoform X1 [KO:K11728]
128599112  bptf; nucleosome-remodeling factor subunit BPTF isoform X1 [KO:K11728]
128614269  rbb4l; histone-binding protein RBBP7 isoform X1 [KO:K10752]
128600348  rbbp4; histone-binding protein RBBP4 [KO:K10752]
128620245  c16h17orf49; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
128610050  zgc:92664; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
128611697  chromatin remodeling regulator CECR2 isoform X1 [KO:K25830]
128610083  chd3; chromodomain-helicase-DNA-binding protein 3 isoform X1 [KO:K11642] [EC:5.6.2.-]
128617426  chd4b; chromodomain-helicase-DNA-binding protein 4 [KO:K11643] [EC:5.6.2.-]
128615707  chd4a; chromodomain-helicase-DNA-binding protein 4a [KO:K11643] [EC:5.6.2.-]
128615423  hdac1; histone deacetylase 1 isoform X1 [KO:K06067] [EC:3.5.1.98]
128603382  mbd2; methyl-CpG-binding domain protein 2 [KO:K11590]
128613455  mbd3b; methyl-CpG-binding domain protein 3b isoform X1 [KO:K11591]
128624387  mbd3a; methyl-CpG-binding domain protein 3a isoform X1 [KO:K11591]
128613157  mta1; metastasis-associated protein MTA1 [KO:K11660]
128609923  mta2; metastasis-associated protein MTA2 isoform X1 [KO:K11660]
128616732  mta3; metastasis-associated protein MTA3 isoform X1 [KO:K11660]
128613666  gatad2ab; GATA zinc finger domain containing 2Ab isoform X1 [KO:K23194]
128609615  transcriptional repressor p66-beta-like [KO:K23194]
128600346  gatad2b; transcriptional repressor p66-beta isoform X1 [KO:K23194]
128624432  transcriptional repressor p66-alpha isoform X1 [KO:K23194]
128611709  phf6; PHD finger protein 6 isoform X1 [KO:K23310]
128620163  cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
128606138  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
128615783  transcription activator BRG1 isoform X1 [KO:K11647] [EC:5.6.2.-]
128599545  smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1 [KO:K11647] [EC:5.6.2.-]
128625589  smarca2; probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
128622534  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1 [KO:K11648]
128614773  smarcc2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
128599843  smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
128600622  smarcc1b; SWI/SNF complex subunit SMARCC1b isoform X1 [KO:K11649]
128617515  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
128609562  smarcd3a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
128609623  smarcd3b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1 [KO:K11650]
128625135  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
128622004  smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
128600219  actb2; actin, cytoplasmic 2 [KO:K05692]
128601766  actb1; actin, cytoplasmic 1 [KO:K05692]
128614839  actl6a; actin-like protein 6A [KO:K11340]
128620044  bcl7ba; B-cell CLL/lymphoma 7 protein family member B-A [KO:K25605]
128606965  bcl7bb; B-cell CLL/lymphoma 7 protein family member B-B [KO:K25605]
128598963  bcl7a; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
128610391  ss18; protein SSXT isoform X1 [KO:K15623]
128619694  calcium-responsive transactivator-like isoform X1 [KO:K15623]
128612572  arid1aa; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
128612729  AT-rich interactive domain-containing protein 1B-like [KO:K11653]
128616176  arid1ab; AT-rich interactive domain-containing protein 1A [KO:K11653]
128601205  arid1b; AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
128612355  zinc finger protein DPF3-like isoform X1 [KO:K22198]
128621695  dpf1; zinc finger protein neuro-d4 [KO:K22198]
128600932  dpf3; zinc finger protein DPF3 isoform X1 [KO:K22198]
128603221  dpf2; zinc finger protein ubi-d4 isoform X1 [KO:K13196]
128617691  arid2; AT-rich interactive domain-containing protein 2 isoform X1 [KO:K11765]
128614712  pbrm1l; polybromo 1, like isoform X1 [KO:K11757]
128624796  pbrm1; protein polybromo-1 isoform X1 [KO:K11757]
128602849  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
128605368  phf10; PHD finger protein 10 [KO:K22197]
128599464  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
128606807  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
128617379  bicral; BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
128600915  ino80; chromatin-remodeling ATPase INO80 isoform X1 [KO:K11665] [EC:5.6.2.-]
128610319  ino80b; INO80 complex subunit B isoform X1 [KO:K11666]
128600005  ino80c; INO80 complex subunit C [KO:K11667]
128608910  INO80 complex subunit D [KO:K11668]
128615743  ino80db; INO80 complex subunit D-B [KO:K11668]
128607689  ino80e; INO80 complex subunit E [KO:K11669]
128601399  tfpt; TCF3 fusion partner [KO:K11670]
128622454  nfrkb; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
128625195  mcrs1; microspherule protein 1 isoform X1 [KO:K11674]
128613511  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X1 [KO:K05610] [EC:3.4.19.12]
128614951  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
128603761  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
128607674  actr5; actin-related protein 5 [KO:K11672]
128607649  actr8; actin-related protein 8 isoform X1 [KO:K11673]
128613177  yy1a; transcriptional repressor protein YY1a [KO:K09201]
128601038  yy1b; transcriptional repressor protein YY1b isoform X1 [KO:K09201]
128617341  srcap; helicase SRCAP [KO:K11661] [EC:5.6.2.-]
128608312  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
128623438  yeats4; YEATS domain-containing protein 4 [KO:K11341]
128624772  vps72a; vacuolar protein sorting 72 homolog a isoform X1 [KO:K11664]
128622618  core histone macro-H2A.1 isoform X1 [KO:K11251]
128612526  histone H2A [KO:K11251]
128612527  histone H2A [KO:K11251]
128614072  histone H2A [KO:K11251]
128615363  histone H2A [KO:K11251]
128620250  histone H2A [KO:K11251]
128604613  histone H2A [KO:K11251]
128604637  histone H2A [KO:K11251]
128604650  histone H2A [KO:K11251]
128604671  histone H2A-like [KO:K11251]
128604723  histone H2A [KO:K11251]
128604724  histone H2A [KO:K11251]
128604795  histone H2A [KO:K11251]
128604796  histone H2A [KO:K11251]
128604917  histone H2A [KO:K11251]
128604918  histone H2A [KO:K11251]
128604919  histone H2A [KO:K11251]
128604975  histone H2A [KO:K11251]
128604976  histone H2A [KO:K11251]
128620819  histone H2A.V [KO:K11251]
128605585  core histone macro-H2A.2 [KO:K11251]
128609966  histone H2A.Z [KO:K11251]
128603706  histone H2AX [KO:K11251]
128598928  histone H2A.V [KO:K11251]
128601714  late histone H2A.2.2 [KO:K11251]
128611545  actr6; actin-related protein 6 [KO:K11662]
128603453  znhit1; zinc finger HIT domain-containing protein 1 [KO:K11663]
128603456  zinc finger HIT domain-containing protein 1-like [KO:K11663]
128607391  ep400; E1A-binding protein p400 isoform X1 [KO:K11320] [EC:5.6.2.-]
128616534  trrap; transformation/transcription domain-associated protein isoform X1 [KO:K08874]
128606717  morf4l1; mortality factor 4-like protein 1 [KO:K11339]
128619244  mrgbp; MRG/MORF4L-binding protein [KO:K11343]
128618627  brd8b; bromodomain-containing protein 8 isoform X1 [KO:K11321]
128623564  ing3; inhibitor of growth protein 3 [KO:K11319]
128608616  epc2; enhancer of polycomb homolog 2 [KO:K11322]
128616817  epc1a; enhancer of polycomb homolog 1 isoform X1 [KO:K11322]
128624248  epc1b; enhancer of polycomb homolog 1b isoform X1 [KO:K11322]
128618457  meaf6; chromatin modification-related protein MEAF6 [KO:K11344]
128603567  kat5b; histone acetyltransferase KAT5b isoform X1 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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