KEGG   PATHWAY: lcm04120
Entry
lcm04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Latimeria chalumnae (coelacanth)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lcm04120  Ubiquitin mediated proteolysis
lcm04120

Other DBs
GO: 0016567
Organism
Latimeria chalumnae (coelacanth) [GN:lcm]
Gene
102362430  UBA52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927]
102361105  RPS27A; ribosomal protein S27a [KO:K02977]
102358077  UBA7; ubiquitin like modifier activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
102348081  UBA1; ubiquitin like modifier activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
102355638  SAE1; SUMO1 activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
102366922  UBA2; ubiquitin like modifier activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
102351153  UBA3; ubiquitin like modifier activating enzyme 3 [KO:K10686] [EC:6.2.1.64]
102365412  UBA6; ubiquitin like modifier activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
102346224  UBE2A; ubiquitin conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
102347893  ubiquitin-conjugating enzyme E2 A-like [KO:K10573] [EC:2.3.2.23]
102349072  UBE2B; ubiquitin conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
102349864  UBE2C; ubiquitin conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
102350283  UBE2D1; ubiquitin conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
102363369  UBE2D2; ubiquitin conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
102365033  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
102363756  ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
106704398  UBE2E3; ubiquitin conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102357356  UBE2E1; ubiquitin conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
102357970  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
102362038  ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102361697  UBE2F; ubiquitin conjugating enzyme E2 F (putative) [KO:K10687] [EC:2.3.2.34]
102365742  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
102347023  UBE2G1; ubiquitin conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
102346897  UBE2G2; ubiquitin conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
102348422  UBE2H; ubiquitin conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
102365863  SUMO-conjugating enzyme UBC9-like [KO:K10577]
102347040  SUMO-conjugating enzyme UBC9 [KO:K10577]
102356337  UBE2J1; ubiquitin conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
102355786  UBE2J2; ubiquitin conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102349653  UBE2K; ubiquitin conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
102346088  UBE2L3; ubiquitin conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
102357142  UBE2L6; ubiquitin conjugating enzyme E2 L6 [KO:K04552] [EC:2.3.2.23]
102367640  UBE2M; ubiquitin conjugating enzyme E2 M [KO:K10579] [EC:2.3.2.34]
102357295  UBE2N; ubiquitin conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102349983  UBE2O; ubiquitin conjugating enzyme E2 O [KO:K10581] [EC:2.3.2.24]
102352603  UBE2QL1; ubiquitin conjugating enzyme E2 Q family like 1 [KO:K10582] [EC:2.3.2.23]
102351424  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
102360307  UBE2Q1; ubiquitin conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
102366904  ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
102350268  CDC34; cell division cycle 34 [KO:K02207] [EC:2.3.2.23]
102355246  UBE2R2; ubiquitin conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
102366745  UBE2S; ubiquitin conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
106705306  UBE2U; ubiquitin conjugating enzyme E2 U (putative) [KO:K10584] [EC:2.3.2.23]
102361547  UBE2W; ubiquitin conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102347317  UBE2Z; ubiquitin conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102355826  BIRC6; baculoviral IAP repeat containing 6 [KO:K10586] [EC:2.3.2.23]
102359497  UBE3A; ubiquitin protein ligase E3A [KO:K10587] [EC:2.3.2.26]
102350384  UBE3B; ubiquitin protein ligase E3B [KO:K10588] [EC:2.3.2.26]
102345594  UBE3C; ubiquitin protein ligase E3C [KO:K10589] [EC:2.3.2.26]
102364698  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
102353199  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
102365782  ITCH; itchy E3 ubiquitin protein ligase [KO:K05632] [EC:2.3.2.26]
102360416  WWP1; WW domain containing E3 ubiquitin protein ligase 1 [KO:K05633] [EC:2.3.2.26]
102355333  WWP2; WW domain containing E3 ubiquitin protein ligase 2 [KO:K05630] [EC:2.3.2.26]
102347280  TRIP12; thyroid hormone receptor interactor 12 [KO:K10590] [EC:2.3.2.26]
102346896  NEDD4; neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase [KO:K10591] [EC:2.3.2.26]
102359976  NEDD4L; neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase [KO:K13305] [EC:2.3.2.26]
102357002  HUWE1; HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase [KO:K10592] [EC:2.3.2.26]
102360156  UBR5; ubiquitin protein ligase E3 component n-recognin 5 [KO:K10593] [EC:2.3.2.26]
102348360  HERC1; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [KO:K10594] [EC:2.3.2.26]
102365741  HERC2; HECT and RLD domain containing E3 ubiquitin protein ligase 2 [KO:K10595] [EC:2.3.2.26]
102354260  HERC3; HECT and RLD domain containing E3 ubiquitin protein ligase 3 [KO:K10614] [EC:2.3.2.26]
102362921  probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
102349133  UBE4A; ubiquitination factor E4A [KO:K10596] [EC:2.3.2.27]
102345165  UBE4B; ubiquitination factor E4B [KO:K10597] [EC:2.3.2.27]
102357996  STUB1; STIP1 homology and U-box containing protein 1 [KO:K09561] [EC:2.3.2.27]
102357146  PPIL2; peptidylprolyl isomerase like 2 [KO:K10598] [EC:5.2.1.8]
102351823  PRPF19; pre-mRNA processing factor 19 [KO:K10599] [EC:2.3.2.27]
102360435  UBOX5; U-box domain containing 5 [KO:K10600]
102353921  MDM2; MDM2 proto-oncogene [KO:K06643] [EC:2.3.2.27]
102349292  CBLC; Cbl proto-oncogene C [KO:K04707] [EC:2.3.2.27]
102345712  CBL; Cbl proto-oncogene [KO:K04707] [EC:2.3.2.27]
102346401  CBLB; Cbl proto-oncogene B [KO:K22517] [EC:2.3.2.27]
102361177  SIAH1; siah E3 ubiquitin protein ligase 1 [KO:K04506] [EC:2.3.2.27]
102353931  TRAF6; TNF receptor associated factor 6 [KO:K03175] [EC:2.3.2.27]
102355070  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102363850  RFWD2; ring finger and WD repeat domain 2 [KO:K10143] [EC:2.3.2.27]
102350333  RCHY1; ring finger and CHY zinc finger domain containing 1 [KO:K10144] [EC:2.3.2.27]
102364182  BIRC2; baculoviral IAP repeat containing 2 [KO:K16060]
102349446  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
102354590  BIRC7; baculoviral IAP repeat containing 7 [KO:K16061]
102359954  PIAS1; protein inhibitor of activated STAT 1 [KO:K04706] [EC:2.3.2.-]
102367086  PIAS2; protein inhibitor of activated STAT 2 [KO:K16063] [EC:2.3.2.-]
102351301  PIAS3; protein inhibitor of activated STAT 3 [KO:K16064] [EC:2.3.2.-]
102350892  PIAS4; protein inhibitor of activated STAT 4 [KO:K16065] [EC:2.3.2.27]
102347402  SYVN1; synoviolin 1 [KO:K10601] [EC:2.3.2.27]
102364942  NHLRC1; NHL repeat containing E3 ubiquitin protein ligase 1 [KO:K10602] [EC:2.3.2.27]
106704829  AIRE; autoimmune regulator [KO:K10603]
102358123  MGRN1; mahogunin ring finger 1 [KO:K10604] [EC:2.3.2.27]
102353765  BRCA1; BRCA1, DNA repair associated [KO:K10605] [EC:2.3.2.27]
102358270  FANCL; Fanconi anemia complementation group L [KO:K10606] [EC:2.3.2.27]
102351326  MID1; midline 1 [KO:K08285] [EC:2.3.2.27]
102349195  tripartite motif-containing protein 2-like [KO:K10607] [EC:2.3.2.27]
102358471  TRIM32; tripartite motif containing 32 [KO:K10607] [EC:2.3.2.27]
102352623  TRIM37; tripartite motif containing 37 [KO:K10608] [EC:2.3.2.27]
102352187  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
102360768  CUL1; cullin 1 [KO:K03347]
102350053  SKP1; S-phase kinase associated protein 1 [KO:K03094]
102363698  BTRC; beta-transducin repeat containing E3 ubiquitin protein ligase [KO:K03362]
102350584  FBXW11; F-box and WD repeat domain containing 11 [KO:K03362]
102356499  SKP2; S-phase kinase associated protein 2 [KO:K03875]
102363147  FBXW7; F-box and WD repeat domain containing 7 [KO:K10260]
102347328  F-box/WD repeat-containing protein 7-like [KO:K10260]
102345690  FBXO2; F-box only protein 2 [KO:K10099]
102361829  FBXO4; F-box protein 4 [KO:K10291]
102357434  CUL2; cullin 2 [KO:K03870]
102362080  ELOC; elongin C [KO:K03872]
102364581  von Hippel-Lindau disease tumor suppressor-like [KO:K03871]
102347874  CUL3; cullin 3 [KO:K03869]
102358487  kelch-like ECH-associated protein 1 [KO:K10456]
102349551  KEAP1; kelch like ECH associated protein 1 [KO:K10456]
102365002  kelch-like protein 13 [KO:K10447]
102363255  KLHL13; kelch like family member 13 [KO:K10447]
102365816  RHOBTB2; Rho related BTB domain containing 2 [KO:K07868]
102365356  RHOBTB1; Rho related BTB domain containing 1 [KO:K07868]
102358015  rho-related BTB domain-containing protein 2-like [KO:K07868]
102362429  CUL4B; cullin 4B [KO:K10609]
102353120  CUL4A; cullin 4A [KO:K10609]
102353166  DDB1; damage specific DNA binding protein 1 [KO:K10610]
102347505  ERCC8; ERCC excision repair 8, CSA ubiquitin ligase complex subunit [KO:K10570]
102351915  DET1; de-etiolated homolog 1 (Arabidopsis) [KO:K10571]
102348519  RNF7; ring finger protein 7 [KO:K10611]
102346415  CUL5; cullin 5 [KO:K10612]
102353233  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102354147  suppressor of cytokine signaling 1-like [KO:K04694]
102346594  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102360670  suppressor of cytokine signaling 3-like [KO:K04696]
102367690  FBXW8; F-box and WD repeat domain containing 8 [KO:K10264]
102356804  ANAPC11; anaphase promoting complex subunit 11 [KO:K03358]
102352690  ANAPC2; anaphase promoting complex subunit 2 [KO:K03349]
102346337  CDC20; cell division cycle 20 [KO:K03363]
102348914  FZR1; fizzy/cell division cycle 20 related 1 [KO:K03364]
102365114  fizzy-related protein homolog [KO:K03364]
102349004  ANAPC1; anaphase promoting complex subunit 1 [KO:K03348]
102358952  CDC27; cell division cycle 27 [KO:K03350]
102365164  ANAPC4; anaphase promoting complex subunit 4 [KO:K03351]
102354298  anaphase-promoting complex subunit 4-like [KO:K03351]
102345994  ANAPC5; anaphase promoting complex subunit 5 [KO:K03352]
102356648  CDC16; cell division cycle 16 [KO:K03353]
102366421  ANAPC7; anaphase promoting complex subunit 7 [KO:K03354]
102356105  CDC23; cell division cycle 23 [KO:K03355]
102348137  ANAPC10; anaphase promoting complex subunit 10 [KO:K03357]
102364023  CDC26; cell division cycle 26 [KO:K03359]
102365997  ANAPC13; anaphase promoting complex subunit 13 [KO:K12456]
102361451  ANAPC15; anaphase promoting complex subunit 15 [KO:K25228]
102345108  ANAPC16; anaphase promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
lcm03050  Proteasome
KO pathway
ko04120   
LinkDB

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