KEGG   PATHWAY: nle05211
Entry
nle05211                    Pathway                                
Name
Renal cell carcinoma - Nomascus leucogenys (northern white-cheeked gibbon)
Description
Renal cell cancer (RCC) accounts for ~3% of human malignancies and its incidence appears to be rising. Although most cases of RCC seem to occur sporadically, an inherited predisposition to renal cancer accounts for 1-4% of cases. RCC is not a single disease, it has several morphological subtypes. Conventional RCC (clear cell RCC) accounts for ~80% of cases, followed by papillary RCC (10-15%), chromophobe RCC (5%), and collecting duct RCC (<1%). Genes potentially involved in sporadic neoplasms of each particular type are VHL, MET, BHD, and FH respectively. In the absence of VHL, hypoxia-inducible factor alpha (HIF-alpha) accumulates, leading to production of several growth factors, including vascular endothelial growth factor and platelet-derived growth factor. Activated MET mediates a number of biological effects including motility, invasion of extracellular matrix, cellular transformation, prevention of apoptosis and metastasis formation. Loss of functional FH leads to accumulation of fumarate in the cell, triggering inhibition of HPH and preventing targeted pVHL-mediated degradation of HIF-alpha. BHD mutations cause the Birt-Hogg-Dube syndrome and its associated chromophobe, hybrid oncocytic, and conventional (clear cell) RCC.
Class
Human Diseases; Cancer: specific types
Pathway map
nle05211  Renal cell carcinoma
nle05211

Organism
Nomascus leucogenys (northern white-cheeked gibbon) [GN:nle]
Gene
100588621  HIF1A; hypoxia-inducible factor 1-alpha isoform X2 [KO:K08268]
100606638  EPAS1; endothelial PAS domain-containing protein 1 [KO:K09095]
100591967  EGLN3; egl nine homolog 3 isoform X1 [KO:K09592] [EC:1.14.11.29]
100594374  EGLN1; egl nine homolog 1 isoform X1 [KO:K09592] [EC:1.14.11.29]
100584172  EGLN2; egl nine homolog 2 [KO:K09592] [EC:1.14.11.29]
100600696  VHL; von Hippel-Lindau disease tumor suppressor isoform X2 [KO:K03871]
100581166  elongin-C-like [KO:K03872]
100596876  ELOC; elongin-C isoform X1 [KO:K03872]
100604447  elongin-B [KO:K03873]
100584170  ELOB; elongin-B [KO:K03873]
100596079  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
100593391  CUL2; cullin-2 isoform X1 [KO:K03870]
100579793  ARNT; aryl hydrocarbon receptor nuclear translocator isoform X3 [KO:K09097]
100589784  ARNT2; aryl hydrocarbon receptor nuclear translocator 2 isoform X1 [KO:K15589]
100589381  EP300; histone acetyltransferase p300 [KO:K04498] [EC:2.3.1.48]
100596998  CREBBP; CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
100594511  SLC2A1; solute carrier family 2, facilitated glucose transporter member 1 [KO:K07299]
100601396  VEGFA; vascular endothelial growth factor A isoform X1 [KO:K05448]
100581386  TGFB1; transforming growth factor beta-1 proprotein isoform X2 [KO:K13375]
100596183  TGFB2; transforming growth factor beta-2 proprotein isoform X1 [KO:K13376]
100591391  TGFB3; transforming growth factor beta-3 proprotein [KO:K13377]
100586714  PDGFB; platelet-derived growth factor subunit B [KO:K17386]
100607585  TGFA; protransforming growth factor alpha isoform X3 [KO:K08774]
100586296  HGF; hepatocyte growth factor isoform X1 [KO:K05460]
100597172  MET; hepatocyte growth factor receptor isoform X3 [KO:K05099] [EC:2.7.10.1]
100600534  GAB1; GRB2-associated-binding protein 1 isoform X4 [KO:K09593]
100588218  PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
100580872  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
100584384  PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
100605788  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
100591270  PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649]
100599301  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
100604331  AKT3; RAC-gamma serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
100587864  AKT2; RAC-beta serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
100587109  AKT1; RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
101178725  BAD; bcl2-associated agonist of cell death [KO:K02158]
100595820  CRKL; crk-like protein [KO:K04438]
100601245  CRK; adapter molecule crk isoform X1 [KO:K04438]
100603139  RAPGEF1; rap guanine nucleotide exchange factor 1 isoform X1 [KO:K06277]
100603891  RAP1A; ras-related protein Rap-1A [KO:K04353]
100593411  RAP1B; ras-related protein Rap-1b [KO:K07836]
100602671  PTPN11; tyrosine-protein phosphatase non-receptor type 11 isoform X1 [KO:K07293] [EC:3.1.3.48]
100605369  LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 11-like [KO:K07293] [EC:3.1.3.48]
100588468  GRB2; growth factor receptor-bound protein 2 [KO:K04364]
100590165  SOS1; son of sevenless homolog 1 isoform X1 [KO:K03099]
100600495  SOS2; LOW QUALITY PROTEIN: son of sevenless homolog 2 [KO:K03099]
100595274  HRAS; GTPase HRas isoform X1 [KO:K02833]
100593773  KRAS; GTPase KRas isoform X1 [KO:K07827]
100592103  NRAS; GTPase NRas [KO:K07828]
100595311  ARAF; serine/threonine-protein kinase A-Raf [KO:K08845] [EC:2.7.11.1]
100582848  BRAF; serine/threonine-protein kinase B-raf isoform X2 [KO:K04365] [EC:2.7.11.1]
100582599  RAF1; RAF proto-oncogene serine/threonine-protein kinase isoform X1 [KO:K04366] [EC:2.7.11.1]
100579506  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
100591827  MAP2K2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
100600574  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
100584480  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
100606580  ETS1; protein C-ets-1 isoform X2 [KO:K02678]
100586501  JUN; transcription factor AP-1 [KO:K04448]
100604516  RAC1; ras-related C3 botulinum toxin substrate 1 [KO:K04392]
100605245  CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393]
100588769  PAK1; serine/threonine-protein kinase PAK 1 isoform X2 [KO:K04409] [EC:2.7.11.1]
100601244  PAK2; serine/threonine-protein kinase PAK 2 [KO:K04410] [EC:2.7.11.1]
100592637  PAK3; serine/threonine-protein kinase PAK 3 isoform X2 [KO:K05733] [EC:2.7.11.1]
100597455  PAK4; serine/threonine-protein kinase PAK 4 isoform X1 [KO:K05734] [EC:2.7.11.1]
100579630  PAK5; serine/threonine-protein kinase PAK 5 isoform X1 [KO:K05736] [EC:2.7.11.1]
100579258  PAK6; serine/threonine-protein kinase PAK 6 [KO:K05735] [EC:2.7.11.1]
100583676  PRCC; proline-rich protein PRCC isoform X3 [KO:K13105]
100604394  TFE3; transcription factor E3 isoform X1 [KO:K09105]
100599083  CDKN1A; cyclin-dependent kinase inhibitor 1 [KO:K06625]
100600492  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
100598314  FLCN; folliculin [KO:K09594]
Compound
C00007  Oxygen
C00122  Fumarate
C00149  (S)-Malate
Reference
  Authors
Cohen HT, McGovern FJ.
  Title
Renal-cell carcinoma.
  Journal
N Engl J Med 353:2477-90 (2005)
DOI:10.1056/NEJMra043172
Reference
  Authors
Pavlovich CP, Schmidt LS.
  Title
Searching for the hereditary causes of renal-cell carcinoma.
  Journal
Nat Rev Cancer 4:381-93 (2004)
DOI:10.1038/nrc1364
Reference
  Authors
Linehan WM, Walther MM, Zbar B.
  Title
The genetic basis of cancer of the kidney.
  Journal
J Urol 170:2163-72 (2003)
DOI:10.1097/01.ju.0000096060.92397.ed
Reference
  Authors
Kim WY, Kaelin WG.
  Title
Role of VHL gene mutation in human cancer.
  Journal
J Clin Oncol 22:4991-5004 (2004)
DOI:10.1200/JCO.2004.05.061
Reference
  Authors
Sudarshan S, Linehan WM, Neckers L.
  Title
HIF and fumarate hydratase in renal cancer.
  Journal
Br J Cancer 96:403-7 (2007)
DOI:10.1038/sj.bjc.6603547
Reference
  Authors
Sudarshan S, Pinto PA, Neckers L, Linehan WM.
  Title
Mechanisms of disease: hereditary leiomyomatosis and renal cell cancer--a distinct form of hereditary kidney cancer.
  Journal
Nat Clin Pract Urol 4:104-10 (2007)
DOI:10.1038/ncpuro0711
Reference
  Authors
Birchmeier C, Birchmeier W, Gherardi E, Vande Woude GF.
  Title
Met, metastasis, motility and more.
  Journal
Nat Rev Mol Cell Biol 4:915-25 (2003)
DOI:10.1038/nrm1261
Reference
  Authors
Muller-Hocker J, Babaryka G, Schmid I, Jung A
  Title
Overexpression of cyclin D1, D3, and p21 in an infantile renal carcinoma with Xp11.2 TFE3-gene fusion.
  Journal
Pathol Res Pract 204:589-97 (2008)
DOI:10.1016/j.prp.2008.01.010
Reference
  Authors
Bodmer D, van den Hurk W, van Groningen JJ, Eleveld MJ, Martens GJ, Weterman MA, van Kessel AG.
  Title
Understanding familial and non-familial renal cell cancer.
  Journal
Hum Mol Genet 11:2489-98 (2002)
DOI:10.1093/hmg/11.20.2489
Reference
  Authors
Kauffman EC, Ricketts CJ, Rais-Bahrami S, Yang Y, Merino MJ, Bottaro DP, Srinivasan R, Linehan WM
  Title
Molecular genetics and cellular features of TFE3 and TFEB fusion kidney cancers.
  Journal
Nat Rev Urol 11:465-75 (2014)
DOI:10.1038/nrurol.2014.162
Reference
  Authors
Skalsky YM, Ajuh PM, Parker C, Lamond AI, Goodwin G, Cooper CS
  Title
PRCC, the commonest TFE3 fusion partner in papillary renal carcinoma is associated with pre-mRNA splicing factors.
  Journal
Oncogene 20:178-87 (2001)
DOI:10.1038/sj.onc.1204056
Reference
  Authors
Medendorp K, van Groningen JJ, Vreede L, Hetterschijt L, Brugmans L, van den Hurk WH, van Kessel AG
  Title
The renal cell carcinoma-associated oncogenic fusion protein PRCCTFE3 provokes p21 WAF1/CIP1-mediated cell cycle delay.
  Journal
Exp Cell Res 315:2399-409 (2009)
DOI:10.1016/j.yexcr.2009.04.022
Related
pathway
nle00020  Citrate cycle (TCA cycle)
nle04010  MAPK signaling pathway
nle04066  HIF-1 signaling pathway
nle04120  Ubiquitin mediated proteolysis
nle04350  TGF-beta signaling pathway
nle04370  VEGF signaling pathway
KO pathway
ko05211   
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