KEGG   PATHWAY: nni04120
Entry
nni04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Nipponia nippon (crested ibis)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
nni04120  Ubiquitin mediated proteolysis
nni04120

Other DBs
GO: 0016567
Organism
Nipponia nippon (crested ibis) [GN:nni]
Gene
104013693  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
104022412  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
104023084  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
104015755  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
104011812  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
104013291  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
104016925  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
104021144  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
104019108  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
104012001  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
104018341  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
104021182  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
104013513  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
104022141  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
104013898  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
104013899  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
104010229  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
104009968  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
104016154  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
104010649  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
104010507  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
104015161  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
104021947  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
104008964  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
104009802  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
104020115  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
104011699  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
104022839  UBE2O; E2/E3 hybrid ubiquitin-protein ligase UBE2O [KO:K10581] [EC:2.3.2.24]
104016822  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
104012324  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
104018873  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
104016263  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
104014952  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
104016171  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
104012234  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
104018677  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
104019320  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
104019121  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
104022291  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
104015226  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
104014365  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
104019915  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
104022786  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
104023556  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
104016394  TRIP12; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
104017160  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
104010832  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
104016447  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
104016746  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
104019314  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
104021206  probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
104013475  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
104018512  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
104008985  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
104023475  STUB1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
104021160  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
104009248  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
104018521  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
104011004  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
104019053  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-like [KO:K04707] [EC:2.3.2.27]
104008757  E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
104014116  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
104018425  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
104011275  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
104016797  protein PML-like [KO:K10054] [EC:2.3.2.-]
104016799  LOW QUALITY PROTEIN: protein PML-like [KO:K10054] [EC:2.3.2.-]
104019573  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
104011958  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
104011356  RFWD2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
104017518  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
104023072  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
104023425  XIAP; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
104020075  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
104017041  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
104014437  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
104018757  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
104008775  SYVN1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
104021882  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
104010662  AIRE; autoimmune regulator [KO:K10603]
104023459  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
104009881  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
104022474  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
104022553  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
104022132  TRIM32; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
104016632  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
104015389  CUL1; cullin-1 isoform X1 [KO:K03347]
104012003  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
104012614  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
104016560  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
104018639  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
104021220  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
104014874  F-box/WD repeat-containing protein 7-like [KO:K10260]
104008996  FBXO2; F-box only protein 2 [KO:K10099]
104016193  FBXO4; F-box only protein 4 [KO:K10291]
104022257  CUL2; cullin-2 [KO:K03870]
104016170  TCEB1; transcription elongation factor B polypeptide 1 isoform X1 [KO:K03872]
104013328  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
104017014  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
104012991  CUL3; cullin-3 [KO:K03869]
104013843  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
104012890  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
104013462  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
104019530  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
104019092  CUL4B; cullin-4B [KO:K10609]
104019416  CUL4A; cullin-4A [KO:K10609]
104009175  DDB1; DNA damage-binding protein 1 [KO:K10610]
104020384  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
104013854  DNA excision repair protein ERCC-8-like [KO:K10570]
104017081  DET1; DET1 homolog [KO:K10571]
104016487  RNF7; RING-box protein 2 [KO:K10611]
104023055  CUL5; cullin-5 [KO:K10612]
104023449  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
104018614  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
104010574  FBXW8; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 8 [KO:K10264]
104022590  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
104015439  CDC20; cell division cycle protein 20 homolog [KO:K03363]
104019608  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
104022463  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
104012257  CDC27; LOW QUALITY PROTEIN: cell division cycle protein 27 homolog [KO:K03350]
104021062  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
104019515  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
104019409  CDC16; cell division cycle protein 16 homolog [KO:K03353]
104020851  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
104012038  CDC23; cell division cycle protein 23 homolog [KO:K03355]
104015957  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
104010622  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
104013504  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
nni03050  Proteasome
KO pathway
ko04120   
LinkDB

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