KEGG   PATHWAY: pop04814
Entry
pop04814                    Pathway                                
Name
Motor proteins - Populus trichocarpa (black cottonwood)
Class
Cellular Processes; Cell motility
Pathway map
pop04814  Motor proteins
pop04814

Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
7482902  uncharacterized protein LOC7482902 [KO:K10418]
7462338  dynein light chain 1, cytoplasmic [KO:K10418]
18095595  dynein light chain 1, cytoplasmic [KO:K10418]
18095659  uncharacterized protein LOC18095659 [KO:K10418]
18094010  uncharacterized protein LOC18094010 [KO:K10418]
18099998  uncharacterized protein LOC18099998 [KO:K10418]
18101820  uncharacterized protein LOC18101820 [KO:K10418]
7479196  dynein light chain 1, cytoplasmic [KO:K10418]
7483531  dynein light chain 1, cytoplasmic [KO:K10418]
7460859  uncharacterized protein LOC7460859 [KO:K10418]
7490781  dynein light chain 1, cytoplasmic [KO:K10418]
127903884  uncharacterized protein LOC127903884 isoform X1 [KO:K10418]
7481732  F-actin-capping protein subunit alpha [KO:K10364]
18098669  F-actin-capping protein subunit alpha [KO:K10364]
7464787  probable F-actin-capping protein subunit beta isoform X1 [KO:K10365]
7467233  tubulin alpha chain [KO:K07374]
7478676  tubulin alpha chain [KO:K07374]
7457696  tubulin alpha-6 chain [KO:K07374]
7463572  tubulin alpha-3 chain [KO:K07374]
7478755  tubulin alpha chain [KO:K07374]
7489664  tubulin alpha-3 chain [KO:K07374]
7491044  tubulin alpha-5 chain [KO:K07374]
7482463  tubulin alpha chain [KO:K07374]
7478050  tubulin beta-1 chain [KO:K07375]
7479116  tubulin beta chain [KO:K07375]
7472769  tubulin beta chain [KO:K07375]
7468015  tubulin beta-2 chain [KO:K07375]
7471684  tubulin beta chain [KO:K07375]
7481503  tubulin beta-2 chain [KO:K07375]
7454884  tubulin beta-1 chain [KO:K07375]
7465852  tubulin beta-5 chain [KO:K07375]
7465861  tubulin beta chain [KO:K07375]
7479658  tubulin beta-5 chain [KO:K07375]
7477677  tubulin beta chain [KO:K07375]
7487287  tubulin beta chain [KO:K07375]
18108966  tubulin beta-5 chain [KO:K07375]
7486729  tubulin beta-5 chain [KO:K07375]
7462497  tubulin beta-5 chain [KO:K07375]
18103507  tubulin beta chain [KO:K07375]
7464075  tubulin beta-5 chain [KO:K07375]
18095120  tubulin beta-4 chain [KO:K07375]
7487442  tubulin beta chain [KO:K07375]
7480106  tubulin beta-4 chain [KO:K07375]
7457384  tubulin gamma-2 chain [KO:K10389]
7494134  tubulin gamma-1 chain [KO:K10389]
7454913  kinesin-like protein KIN-5B [KO:K10398]
7485736  kinesin-like protein KIN-5D [KO:K10398]
7489284  kinesin-like protein KIN-5D [KO:K10398]
18106196  kinesin-like protein KIN-5C [KO:K10398]
7465282  kinesin-like protein KIN-5D [KO:K10398]
7492246  kinesin-like protein KIN-5C [KO:K10398]
7453885  kinesin-like protein NACK1 [KO:K11498]
18101231  kinesin-like protein KIN-7G [KO:K11498]
7488857  kinesin-like protein KIN-7N isoform X1 [KO:K11498]
18100283  kinesin-like protein NACK2 [KO:K11498]
7488042  kinesin-like protein KIN-7K, chloroplastic isoform X1 [KO:K11498]
7490672  kinesin-like protein KIN-7C isoform X1 [KO:K11498]
7463146  kinesin-like protein KIN-7C, mitochondrial [KO:K11498]
7496086  kinesin-like protein KIN-7O [KO:K11498]
18099220  kinesin-like protein KIN-7C isoform X1 [KO:K11498]
7453601  kinesin-like protein KIN-7E [KO:K11498]
7470020  kinesin-like protein KIN-7D, mitochondrial isoform X1 [KO:K11498]
7463991  kinesin-like protein KIN-7E isoform X1 [KO:K11498]
7464002  kinesin-like protein KIN-7D, mitochondrial [KO:K11498]
7455631  kinesin-like protein KIN-7K, chloroplastic isoform X1 [KO:K11498]
7486757  kinesin-like protein NACK1 isoform X1 [KO:K11498]
7487081  kinesin-like protein KIN-8A isoform X2 [KO:K26157]
7454519  kinesin-like protein KIN-10C isoform X1 [KO:K10403]
7487255  kinesin-like protein KIN-10B [KO:K10403]
7468484  kinesin-like protein KIN-12B [KO:K10400]
7488589  kinesin-like protein KIN-12B isoform X1 [KO:K10400]
7481573  kinesin-like protein KIN-12C [KO:K10400]
7485075  kinesin-like protein KIN-12F isoform X1 [KO:K10400]
18097837  kinesin-like protein KIN-12D [KO:K10400]
18098038  kinesin-like protein KIN-12E [KO:K10400]
7460104  kinesin-like protein KIN-12E isoform X1 [KO:K10400]
7478394  kinesin-like protein KIN-13B isoform X1 [KO:K10393]
7496691  kinesin-like protein KIN-13A isoform X1 [KO:K10393]
7476279  kinesin-like protein KIN-13B [KO:K10393]
7470552  kinesin-like protein KIN-13B [KO:K10393]
18101800  kinesin-like protein KIN-13A [KO:K10393]
18101778  kinesin-like protein KIN-13A isoform X1 [KO:K10393]
7461476  myosin-6 [KO:K10357]
7492286  myosin-15 isoform X1 [KO:K10357]
18095652  myosin-2 isoform X1 [KO:K10357]
7471987  myosin-9 isoform X1 [KO:K10357]
18095019  myosin-12 [KO:K10357]
18108063  myosin-11 [KO:K10357]
7487689  myosin-9 [KO:K10357]
18094847  myosin-17 [KO:K10357]
7460857  myosin-2 [KO:K10357]
7489286  myosin-12 isoform X1 [KO:K10357]
7497596  myosin-17 [KO:K10357]
7480903  myosin-6 isoform X1 [KO:K10357]
7457168  myosin-1 isoform X1 [KO:K10357]
7486359  myosin-1 [KO:K10357]
7458147  actin-97 [KO:K10355]
7490729  actin-7 isoform X2 [KO:K10355]
7492024  actin-7 [KO:K10355]
7467546  actin-97 [KO:K10355]
18108099  actin-7 [KO:K10355]
7489063  actin-7 [KO:K10355]
7479526  actin [KO:K10355]
7483974  actin [KO:K10355]
18100314  actin-66 isoform X1 [KO:K10355]
Reference
  Authors
Hirokawa N, Niwa S, Tanaka Y
  Title
Molecular motors in neurons: transport mechanisms and roles in brain function, development, and disease.
  Journal
Neuron 68:610-38 (2010)
DOI:10.1016/j.neuron.2010.09.039
Reference
PMID:25470043 (PDB:4RH7)
  Authors
Schmidt H, Zalyte R, Urnavicius L, Carter AP
  Title
Structure of human cytoplasmic dynein-2 primed for its power stroke.
  Journal
Nature 518:435-438 (2015)
DOI:10.1038/nature14023
Reference
PMID:22398446 (PDB:3VKG 3VKH)
  Authors
Kon T, Oyama T, Shimo-Kon R, Imamula K, Shima T, Sutoh K, Kurisu G
  Title
The 2.8 A crystal structure of the dynein motor domain.
  Journal
Nature 484:345-50 (2012)
DOI:10.1038/nature10955
Reference
PMID:22997337 (PDB:3J1T 3J1U)
  Authors
Redwine WB, Hernandez-Lopez R, Zou S, Huang J, Reck-Peterson SL, Leschziner AE
  Title
Structural basis for microtubule binding and release by dynein.
  Journal
Science 337:1532-1536 (2012)
DOI:10.1126/science.1224151
Reference
  Authors
Gibbs KL, Greensmith L, Schiavo G
  Title
Regulation of Axonal Transport by Protein Kinases.
  Journal
Trends Biochem Sci 40:597-610 (2015)
DOI:10.1016/j.tibs.2015.08.003
Reference
PMID:28602352 (PDB:5NUG 5NVS 5NVU 5NW4)
  Authors
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
  Title
Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated.
  Journal
Cell 169:1303-1314.e18 (2017)
DOI:10.1016/j.cell.2017.05.025
Reference
PMID:25814576 (PDB:5ADX 5AFR 5AFU)
  Authors
Urnavicius L, Zhang K, Diamant AG, Motz C, Schlager MA, Yu M, Patel NA, Robinson CV, Carter AP
  Title
The structure of the dynactin complex and its interaction with dynein.
  Journal
Science 347:1441-1446 (2015)
DOI:10.1126/science.aaa4080
Reference
PMID:29420470 (PDB:5OWO 6F1T 6F1U 6F1V 6F1Y 6F1Z 6F38 6F3A)
  Authors
Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP
  Title
Cryo-EM shows how dynactin recruits two dyneins for faster movement.
  Journal
Nature 554:202-206 (2018)
DOI:10.1038/nature25462
Reference
  Authors
Reck-Peterson SL, Redwine WB, Vale RD, Carter AP
  Title
The cytoplasmic dynein transport machinery and its many cargoes.
  Journal
Nat Rev Mol Cell Biol 19:382-398 (2018)
DOI:10.1038/s41580-018-0004-3
Reference
PMID:23434508 (PDB:3J2U)
  Authors
Asenjo AB, Chatterjee C, Tan D, DePaoli V, Rice WJ, Diaz-Avalos R, Silvestry M, Sosa H
  Title
Structural model for tubulin recognition and deformation by kinesin-13 microtubule depolymerases.
  Journal
Cell Rep 3:759-68 (2013)
DOI:10.1016/j.celrep.2013.01.030
Reference
PMID:10338210 (PDB:1B7T)
  Authors
Houdusse A, Kalabokis VN, Himmel D, Szent-Gyorgyi AG, Cohen C
  Title
Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
  Journal
Cell 97:459-70 (1999)
DOI:10.1016/s0092-8674(00)80756-4
Reference
PMID:9428521 (PDB:3KIN)
  Authors
Kozielski F, Sack S, Marx A, Thormahlen M, Schonbrunn E, Biou V, Thompson A, Mandelkow EM, Mandelkow E
  Title
The crystal structure of dimeric kinesin and implications for microtubule-dependent motility.
  Journal
Cell 91:985-94 (1997)
DOI:10.1016/s0092-8674(00)80489-4
Reference
PMID:8316857 (PDB:2MYS)
  Authors
Rayment I, Rypniewski WR, Schmidt-Base K, Smith R, Tomchick DR, Benning MM, Winkelmann DA, Wesenberg G, Holden HM
  Title
Three-dimensional structure of myosin subfragment-1: a molecular motor.
  Journal
Science 261:50-8 (1993)
DOI:10.1126/science.8316857
Reference
  Authors
Parker D, Bryant Z, Delp SL
  Title
Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics.
  Journal
Cell Mol Bioeng 2:366-374 (2009)
DOI:10.1007/s12195-009-0084-4
Reference
  Authors
Dominguez R, Holmes KC
  Title
Actin structure and function.
  Journal
Annu Rev Biophys 40:169-86 (2011)
DOI:10.1146/annurev-biophys-042910-155359
Reference
PMID:31919429 (PDB:6KN7 6KN8)
  Authors
Yamada Y, Namba K, Fujii T
  Title
Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
  Journal
Nat Commun 11:153 (2020)
DOI:10.1038/s41467-019-14008-1
Reference
  Authors
Kruppa AJ, Buss F
  Title
Motor proteins at the mitochondria-cytoskeleton interface.
  Journal
J Cell Sci 134:239092 (2021)
DOI:10.1242/jcs.226084
KO pathway
ko04814   
LinkDB

DBGET integrated database retrieval system