KEGG   PATHWAY: srx04141
Entry
srx04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Sinocyclocheilus rhinocerous
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
srx04141  Protein processing in endoplasmic reticulum
srx04141

Other DBs
GO: 0030433 0034976
Organism
Sinocyclocheilus rhinocerous [GN:srx]
Gene
107705201  [KO:K09525]
107705275  [KO:K07765] [EC:3.4.24.85]
107705351  [KO:K14000]
107705415  erlec1; endoplasmic reticulum lectin 1 isoform X1 [KO:K14008]
107705646  [KO:K04426] [EC:2.7.11.25]
107705666  [KO:K10085]
107705745  [KO:K07151] [EC:2.4.99.18]
107705812  [KO:K09503]
107705915  [KO:K04374]
107706079  [KO:K11718] [EC:2.4.1.-]
107706087  dnajc3; dnaJ homolog subfamily C member 3 [KO:K09523]
107706198  [KO:K09481]
107706392  [KO:K12275]
107706573  [KO:K10666] [EC:2.3.2.27]
107706614  [KO:K04555] [EC:2.3.2.23]
107706893  ero1b; ERO1-like protein beta isoform X1 [KO:K10976] [EC:1.8.4.-]
107706988  [KO:K04554] [EC:2.3.2.23]
107707001  [KO:K05638]
107707053  [KO:K09523]
107707137  [KO:K10575] [EC:2.3.2.23]
107707207  [KO:K04440] [EC:2.7.11.24]
107707369  [KO:K09518]
107707695  [KO:K03237]
107707743  [KO:K10100]
107708324  [KO:K07953] [EC:3.6.5.-]
107708640  [KO:K13525]
107708838  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
107708927  [KO:K06689] [EC:2.3.2.23]
107709004  [KO:K04440] [EC:2.7.11.24]
107709694  [KO:K23741]
107709760  derl2; derlin-2 isoform X1 [KO:K13989]
107709841  [KO:K03173] [EC:2.3.2.27]
107710009  [KO:K09580] [EC:5.3.4.1]
107710053  [KO:K04374]
107710235  [KO:K14026]
107710277  p4hb; protein disulfide-isomerase isoform X1 [KO:K09580] [EC:5.3.4.1]
107710433  [KO:K09525]
107710557  [KO:K09054]
107711044  [KO:K10956]
107711069  [KO:K10088]
107711093  [KO:K14018]
107711204  [KO:K09507]
107711304  [KO:K08056] [EC:5.3.4.1]
107711520  [KO:K01228] [EC:3.2.1.106]
107711715  [KO:K02161]
107711770  [KO:K13251]
107711881  derl3; derlin-3 [KO:K13989]
107712243  [KO:K04431] [EC:2.7.12.2]
107712247  [KO:K01230] [EC:3.2.1.113]
107712369  [KO:K10575] [EC:2.3.2.23]
107712549  [KO:K09541]
107713022  [KO:K14016]
107713093  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
107713435  [KO:K03283]
107713461  [KO:K09542]
107713494  [KO:K10956]
107713500  [KO:K10084]
107713614  [KO:K14007]
107713617  [KO:K07953] [EC:3.6.5.-]
107713664  [KO:K03347]
107713681  [KO:K12668]
107713794  [KO:K07151] [EC:2.4.99.18]
107713850  [KO:K01230] [EC:3.2.1.113]
107714114  [KO:K13525]
107714267  [KO:K14010]
107714487  [KO:K04554] [EC:2.3.2.23]
107714495  [KO:K12666]
107714583  [KO:K14016]
107714714  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
107714924  [KO:K11519]
107714985  [KO:K04554] [EC:2.3.2.23]
107715202  dnajb12; dnaJ homolog subfamily B member 12 [KO:K09518]
107715455  [KO:K14005]
107715537  [KO:K03173] [EC:2.3.2.27]
107715739  [KO:K14000]
107715757  [KO:K03173] [EC:2.3.2.27]
107715867  [KO:K24351]
107715884  [KO:K14005]
107716121  ddost; LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
107716349  [KO:K09518]
107716684  [KO:K09525]
107716732  [KO:K08056] [EC:5.3.4.1]
107716785  [KO:K09508]
107716922  [KO:K05638]
107717106  [KO:K06689] [EC:2.3.2.23]
107717161  [KO:K08057]
107717165  [KO:K10839]
107717344  rnf185; E3 ubiquitin-protein ligase RNF185 isoform X1 [KO:K10666] [EC:2.3.2.27]
107717402  [KO:K10082]
107717405  syvn1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
107717559  [KO:K10086]
107717761  [KO:K10839]
107717863  [KO:K26501]
107717864  [KO:K26501]
107717977  [KO:K14011]
107718098  [KO:K09521]
107718494  [KO:K06689] [EC:2.3.2.23]
107718577  [KO:K04431] [EC:2.7.12.2]
107718593  [KO:K08852] [EC:2.7.11.1 3.1.26.-]
107718622  [KO:K09562]
107718816  [KO:K10597] [EC:2.3.2.27]
107718856  [KO:K09485]
107719069  [KO:K10080]
107719076  [KO:K04440] [EC:2.7.11.24]
107719551  [KO:K14011]
107719770  [KO:K01228] [EC:3.2.1.106]
107719809  [KO:K09517]
107719908  [KO:K09525]
107719942  [KO:K14004]
107720002  [KO:K04440] [EC:2.7.11.24]
107720019  [KO:K02159]
107720140  [KO:K11718] [EC:2.4.1.-]
107720316  [KO:K09502]
107720356  [KO:K14004]
107720384  [KO:K14005]
107721096  [KO:K06689] [EC:2.3.2.23]
107721334  [KO:K14026]
107721480  [KO:K02159]
107721618  [KO:K09508]
107721632  [KO:K09542]
107721861  [KO:K09525]
107721932  [KO:K07765] [EC:3.4.24.85]
107722591  [KO:K09521]
107722658  [KO:K03853] [EC:3.4.22.53]
107722661  [KO:K01367] [EC:3.4.22.52]
107722663  [KO:K03853] [EC:3.4.22.53]
107722669  [KO:K03853] [EC:3.4.22.53]
107722752  [KO:K05546] [EC:3.2.1.207]
107722775  [KO:K10575] [EC:2.3.2.23]
107722925  [KO:K08852] [EC:2.7.11.1 3.1.26.-]
107723131  edem2; LOW QUALITY PROTEIN: ER degradation-enhancing alpha-mannosidase-like protein 2 [KO:K10085]
107723138  [KO:K09503]
107723380  [KO:K28202]
107723518  [KO:K09481]
107723609  [KO:K03868] [EC:2.3.2.32]
107723685  [KO:K10950] [EC:1.8.4.-]
107723851  [KO:K01367] [EC:3.4.22.52]
107723933  [KO:K08057]
107723982  [KO:K10636] [EC:2.3.2.36]
107724390  rrbp1; ribosome-binding protein 1 isoform X1 [KO:K14000]
107724418  [KO:K14010]
107724469  [KO:K01230] [EC:3.2.1.113]
107724584  [KO:K03853] [EC:3.4.22.53]
107724634  [KO:K09049]
107724711  [KO:K10839]
107724876  [KO:K13989]
107725022  [KO:K08288]
107725098  [KO:K03173] [EC:2.3.2.27]
107725280  [KO:K14003]
107725381  ern2; serine/threonine-protein kinase/endoribonuclease IRE2 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
107725794  [KO:K13999]
107725823  [KO:K05638]
107726017  [KO:K09487]
107726167  [KO:K09049]
107726313  [KO:K12668]
107726427  [KO:K08653] [EC:3.4.21.112]
107726458  [KO:K09540]
107726466  [KO:K09584] [EC:5.3.4.1]
107726471  [KO:K09054]
107726621  [KO:K09540]
107726678  [KO:K04523]
107726698  [KO:K04079]
107726707  [KO:K03237]
107727097  [KO:K02159]
107727219  [KO:K03347]
107727231  [KO:K09582] [EC:5.3.4.1]
107727235  [KO:K07342]
107727334  [KO:K11718] [EC:2.4.1.-]
107727540  [KO:K02161]
107727625  [KO:K01230] [EC:3.2.1.113]
107727634  [KO:K09525]
107728026  [KO:K01367] [EC:3.4.22.52]
107728111  [KO:K04079]
107728271  [KO:K03094]
107728686  [KO:K09507]
107729285  [KO:K14006]
107729318  [KO:K14007]
107729426  [KO:K02159]
107729452  [KO:K02159]
107729453  [KO:K02159]
107729582  ern1; serine/threonine-protein kinase/endoribonuclease IRE1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
107729657  [KO:K02161]
107729795  [KO:K01230] [EC:3.2.1.113]
107729946  ssr1; translocon-associated protein subunit alpha isoform X1 [KO:K13249]
107729986  [KO:K12668]
107730007  [KO:K13984] [EC:5.3.4.1]
107730087  [KO:K02159]
107730336  traf2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
107730573  [KO:K14020]
107730601  [KO:K04079]
107730604  [KO:K04079]
107730665  [KO:K05546] [EC:3.2.1.207]
107730668  [KO:K24348]
107730726  [KO:K02159]
107730775  [KO:K02159]
107730945  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
107731253  [KO:K09525]
107731307  [KO:K10666] [EC:2.3.2.27]
107731363  [KO:K14007]
107731474  hspbp1; hsp70-binding protein 1 [KO:K09562]
107731500  [KO:K10578] [EC:2.3.2.23]
107731701  [KO:K19478]
107731764  [KO:K09517]
107732277  [KO:K26502]
107732416  [KO:K01367] [EC:3.4.22.52]
107732473  [KO:K08056] [EC:5.3.4.1]
107732486  [KO:K04079]
107732494  [KO:K03237]
107732557  [KO:K09555]
107732575  [KO:K10661] [EC:2.3.2.27]
107732597  [KO:K09485]
107732640  [KO:K09584] [EC:5.3.4.1]
107732696  [KO:K14007]
107732750  [KO:K14005]
107732760  [KO:K09518]
107732763  [KO:K07953] [EC:3.6.5.-]
107733409  [KO:K19478]
107733432  [KO:K08054]
107733527  [KO:K06689] [EC:2.3.2.23]
107733569  mbtps1; membrane-bound transcription factor site-1 protease [KO:K08653] [EC:3.4.21.112]
107733578  [KO:K09525]
107733587  [KO:K10088]
107733619  [KO:K11718] [EC:2.4.1.-]
107733739  [KO:K08860] [EC:2.7.11.1]
107733771  [KO:K06689] [EC:2.3.2.23]
107734238  [KO:K14006]
107734257  [KO:K03853] [EC:3.4.22.53]
107734280  [KO:K01367] [EC:3.4.22.52]
107734414  [KO:K09490] [EC:3.6.4.10]
107734415  [KO:K09490] [EC:3.6.4.10]
107734417  [KO:K09490] [EC:3.6.4.10]
107734501  [KO:K14009]
107734605  ddit3; DNA damage-inducible transcript 3 protein isoform X1 [KO:K04452]
107734672  [KO:K26502]
107735561  [KO:K09503]
107736624  [KO:K09507]
107736811  [KO:K14008]
107736822  [KO:K11519]
107736877  [KO:K10086]
107736907  [KO:K23741]
107736961  [KO:K14010]
107737028  [KO:K14003]
107737635  [KO:K14012]
107737640  [KO:K04571]
107737669  [KO:K12670]
107737856  [KO:K10575] [EC:2.3.2.23]
107737987  [KO:K04374]
107738010  [KO:K09523]
107738178  [KO:K12275]
107738749  herpud1; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein [KO:K14027]
107739404  [KO:K03283]
107739439  [KO:K09530] [EC:1.8.4.-]
107739476  [KO:K04556] [EC:2.3.2.31]
107739538  [KO:K13250]
107739561  [KO:K01456] [EC:3.5.1.52]
107739696  [KO:K10086]
107739703  [KO:K23741]
107739740  [KO:K10080]
107739892  [KO:K14008]
107740022  [KO:K05546] [EC:3.2.1.207]
107740135  [KO:K14001]
107740310  [KO:K14027]
107740525  map3k5; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 5 [KO:K04426] [EC:2.7.11.25]
107740600  [KO:K05638]
107740605  [KO:K14007]
107740611  [KO:K04374]
107740723  [KO:K24348]
107741048  [KO:K10601] [EC:2.3.2.27]
107741050  [KO:K10082]
107741325  [KO:K14012]
107741342  [KO:K04571]
107741526  [KO:K14000]
107741709  [KO:K03347]
107741739  [KO:K08056] [EC:5.3.4.1]
107741760  [KO:K09582] [EC:5.3.4.1]
107742257  txndc5; thioredoxin domain-containing protein 5 [KO:K13984] [EC:5.3.4.1]
107742306  [KO:K14025]
107742439  skp1; S-phase kinase-associated protein 1 [KO:K03094]
107742487  [KO:K14001]
107742510  [KO:K14020]
107742640  [KO:K09541]
107742702  [KO:K24349]
107742788  [KO:K10839]
107742789  [KO:K08057]
107742905  [KO:K12667]
107742990  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
107743071  [KO:K09490] [EC:3.6.4.10]
107743126  [KO:K14009]
107743281  [KO:K13719] [EC:3.1.2.-]
107743323  [KO:K01230] [EC:3.2.1.113]
107743336  [KO:K14007]
107743417  [KO:K09487]
107743805  cryab; alpha-crystallin B chain [KO:K09542]
107743868  [KO:K08057]
107744323  [KO:K13989]
107744629  hyou1; hypoxia up-regulated protein 1 [KO:K09486]
107744844  [KO:K12666]
107745199  [KO:K03283]
107745202  [KO:K09542]
107745341  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [KO:K12667]
107745421  [KO:K13251]
107745759  [KO:K09525]
107746060  [KO:K08054]
107746155  [KO:K08054]
107746458  [KO:K06689] [EC:2.3.2.23]
107746475  [KO:K03173] [EC:2.3.2.27]
107746728  [KO:K09502]
107746855  [KO:K13525]
107746903  [KO:K09555]
107746911  [KO:K10661] [EC:2.3.2.27]
107747001  [KO:K09486]
107747002  [KO:K03283]
107747146  [KO:K09507]
107747398  [KO:K19478]
107747426  [KO:K10839]
107747547  [KO:K06689] [EC:2.3.2.23]
107747580  [KO:K08860] [EC:2.7.11.1]
107747664  [KO:K09542]
107747792  [KO:K06689] [EC:2.3.2.23]
107747974  [KO:K10100]
107747984  [KO:K09525]
107748391  [KO:K10956]
107748584  [KO:K03283]
107748685  [KO:K01456] [EC:3.5.1.52]
107748705  [KO:K13250]
107748812  [KO:K03868] [EC:2.3.2.32]
107748935  [KO:K11718] [EC:2.4.1.-]
107749009  [KO:K04440] [EC:2.7.11.24]
107749541  atxn3; ataxin-3 [KO:K11863] [EC:3.4.22.-]
107749704  [KO:K14020]
107749768  [KO:K06689] [EC:2.3.2.23]
107749843  [KO:K14007]
107749917  [KO:K04440] [EC:2.7.11.24]
107750080  [KO:K24349]
107750244  [KO:K10084]
107750248  [KO:K10956]
107750337  [KO:K06689] [EC:2.3.2.23]
107750782  [KO:K10086]
107750920  [KO:K08057]
107751236  [KO:K10099]
107751243  [KO:K13719] [EC:3.1.2.-]
107751398  [KO:K03283]
107751465  bag2; BAG family molecular chaperone regulator 2 [KO:K09556]
107751681  [KO:K07151] [EC:2.4.99.18]
107751700  [KO:K10666] [EC:2.3.2.27]
107751763  ero1a; ERO1-like protein alpha [KO:K10950] [EC:1.8.4.-]
107752097  [KO:K14006]
107752434  [KO:K08057]
107752457  [KO:K10636] [EC:2.3.2.36]
107752470  svip; small VCP/p97-interacting protein isoform X1 [KO:K14014]
107752763  [KO:K03237]
107753027  [KO:K09561] [EC:2.3.2.27]
107753241  nploc4; nuclear protein localization protein 4 homolog [KO:K14015]
107753598  [KO:K08056] [EC:5.3.4.1]
107753900  [KO:K14006]
107754018  [KO:K08288]
107754819  [KO:K08056] [EC:5.3.4.1]
107755342  [KO:K01367] [EC:3.4.22.52]
107755343  [KO:K03853] [EC:3.4.22.53]
107755344  [KO:K03853] [EC:3.4.22.53]
107755345  [KO:K03853] [EC:3.4.22.53]
107755373  [KO:K09530] [EC:1.8.4.-]
107755457  [KO:K14015]
107755462  [KO:K14007]
107755537  [KO:K04426] [EC:2.7.11.25]
107755643  [KO:K14025]
107755925  [KO:K03853] [EC:3.4.22.53]
107756491  [KO:K05546] [EC:3.2.1.207]
107756640  [KO:K10099]
107756804  [KO:K04440] [EC:2.7.11.24]
107756852  [KO:K13249]
107756885  [KO:K04523]
107757007  [KO:K01367] [EC:3.4.22.52]
107757047  [KO:K10839]
107757085  [KO:K08852] [EC:2.7.11.1 3.1.26.-]
107757715  [KO:K02161]
107757777  [KO:K09503]
107757822  [KO:K03347]
107757847  [KO:K14007]
107757866  [KO:K07953] [EC:3.6.5.-]
107757893  [KO:K14018]
107757969  [KO:K23741]
107758230  [KO:K01367] [EC:3.4.22.52]
107758289  [KO:K07342]
107758532  [KO:K06689] [EC:2.3.2.23]
107758586  [KO:K07151] [EC:2.4.99.18]
107758797  [KO:K09561] [EC:2.3.2.27]
107758802  [KO:K14010]
Compound
C00076  Calcium cation
G00009  
G00010  
G00011  
G00012  
G10694  
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
srx00510  N-Glycan biosynthesis
srx03050  Proteasome
srx03060  Protein export
srx04210  Apoptosis
KO pathway
ko04141   

DBGET integrated database retrieval system