KEGG   PATHWAY: pgig04120
Entry
pgig04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Pteropus vampyrus (Indian flying fox)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pgig04120  Ubiquitin mediated proteolysis
pgig04120

Other DBs
GO: 0016567
Organism
Pteropus vampyrus (Indian flying fox) [GN:pgig]
Gene
120581290  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
120581295  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
120581345  CDC23; cell division cycle protein 23 homolog [KO:K03355]
120581390  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
120581656  [KO:K20217] [EC:2.3.2.23]
120581657  [KO:K20217] [EC:2.3.2.23]
120582039  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
120582104  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
120582157  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
120582367  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
120582770  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
120583106  [KO:K03178] [EC:6.2.1.45]
120583175  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
120583662  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
120584130  CUL2; cullin-2 isoform X1 [KO:K03870]
120584732  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
120584877  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
120585143  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
120585507  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
120585508  ELOC; elongin-C [KO:K03872]
120585575  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
120585819  FBXO2; F-box only protein 2 [KO:K10099]
120585840  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
120585874  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
120586043  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
120586058  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
120586152  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
120586194  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
120586292  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
120587990  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
120588149  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
120588212  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
120588309  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
120588970  [KO:K02977]
120589270  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
120589322  [KO:K06689] [EC:2.3.2.23]
120589685  [KO:K02927]
120589811  UBB; polyubiquitin-B [KO:K04551]
120590295  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
120591142  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
120592225  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
120592428  [KO:K03357]
120592778  [KO:K03178] [EC:6.2.1.45]
120592779  [KO:K03178] [EC:6.2.1.45]
120593570  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
120593789  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
120593902  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
120594113  [KO:K03178] [EC:6.2.1.45]
120594953  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
120595315  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
120595323  HERC2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
120595531  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
120596140  CUL7; cullin-7 [KO:K10613]
120596273  [KO:K06689] [EC:2.3.2.23]
120596837  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
120597077  CUL3; cullin-3 isoform X1 [KO:K03869]
120597137  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
120597873  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
120598144  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
120598310  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
120598618  [KO:K02927]
120598933  AIRE; autoimmune regulator [KO:K10603]
120599313  DET1; DET1 homolog [KO:K10571]
120599344  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
120599512  [KO:K03178] [EC:6.2.1.45]
120599741  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
120599874  CUL4B; cullin-4B isoform X1 [KO:K10609]
120600032  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
120600212  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
120600330  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
120600365  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
120600870  DDB1; DNA damage-binding protein 1 [KO:K10610]
120601000  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
120601171  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
120601485  CUL1; cullin-1 [KO:K03347]
120601941  UBE3B; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
120602973  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
120603459  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
120603562  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
120603728  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
120603982  BIRC7; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
120604474  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
120604544  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
120604608  NEDD4; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
120605043  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
120605267  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
120605512  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
120605576  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
120605700  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
120605784  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
120605826  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
120606104  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
120606568  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
120606642  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
120606754  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
120606843  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
120606846  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
120606982  KLHL9; kelch-like protein 9 [KO:K10447]
120607146  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
120607230  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
120607287  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
120608152  [KO:K06689] [EC:2.3.2.23]
120608191  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
120608206  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
120609176  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
120609382  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
120609402  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
120609433  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
120609514  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
120609714  [KO:K03357]
120610278  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
120610863  KEAP1; kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
120611051  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
120611267  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
120611599  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
120612220  [KO:K04725] [EC:2.3.2.27]
120612911  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
120613286  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
120613334  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
120614089  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
120614208  [KO:K03178] [EC:6.2.1.45]
120614879  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
120615356  FZR1; fizzy-related protein homolog [KO:K03364]
120615378  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
120615604  CDC16; cell division cycle protein 16 homolog [KO:K03353]
120615618  CUL4A; cullin-4A [KO:K10609]
120615996  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
120616081  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
120616089  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
120616340  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
120616538  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
120616856  [KO:K03178] [EC:6.2.1.45]
120617242  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
120617538  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
120617637  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
120617899  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
120617996  [KO:K20217] [EC:2.3.2.23]
120618083  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
120618084  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
120618896  [KO:K02927]
120619029  CUL5; cullin-5 [KO:K10612]
120619216  CDC20; cell division cycle protein 20 homolog [KO:K03363]
120620196  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
120620211  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
120620288  ELOB; elongin-B [KO:K03873]
120620347  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
120620390  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
120620811  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
120621094  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
120621453  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
120621624  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
120621637  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
120621794  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
120622051  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
120622842  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pgig03050  Proteasome
KO pathway
ko04120   

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