KEGG   PATHWAY: sko04120
Entry
sko04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Saccoglossus kowalevskii (acorn worm)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
sko04120  Ubiquitin mediated proteolysis
sko04120

Other DBs
GO: 0016567
Organism
Saccoglossus kowalevskii (acorn worm) [GN:sko]
Gene
100313603  [KO:K03364]
100313722  [KO:K03094]
100329075  [KO:K03362]
100329093  NEDD4L; neural precursor cell expressed, developmentally down-regulated 4-like [KO:K10591] [EC:2.3.2.26]
100366296  [KO:K03871]
100367020  [KO:K10611]
100367082  [KO:K10593] [EC:2.3.2.26]
100367098  [KO:K03359]
100367521  [KO:K04554] [EC:2.3.2.23]
100367567  [KO:K10596] [EC:2.3.2.27]
100367936  [KO:K07868]
100368332  [KO:K03869]
100368369  [KO:K10687] [EC:2.3.2.34]
100368482  [KO:K04556] [EC:2.3.2.31]
100368804  [KO:K03357]
100369057  [KO:K10456]
100369167  [KO:K10587] [EC:2.3.2.26]
100369223  [KO:K10447]
100369485  [KO:K10590] [EC:2.3.2.26]
100369938  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100370074  UBE4B; ubiquitination factor E4B (UFD2 homolog, yeast) [KO:K10597] [EC:2.3.2.27]
100370245  [KO:K10584] [EC:2.3.2.23]
100370598  [KO:K03348]
100370653  [KO:K10699] [EC:6.2.1.45]
100370762  [KO:K07868]
100370827  [KO:K10601] [EC:2.3.2.27]
100370984  [KO:K10586] [EC:2.3.2.23]
100370988  [KO:K10610]
100371067  CUL2; cullin 2 [KO:K03870]
100371275  [KO:K10612]
100371392  [KO:K04649] [EC:2.3.2.23]
100371402  [KO:K03363]
100371471  [KO:K04555] [EC:2.3.2.23]
100371483  [KO:K10592] [EC:2.3.2.26]
100371688  [KO:K10264]
100371975  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100372134  [KO:K03350]
100372137  [KO:K10594] [EC:2.3.2.26]
100372314  [KO:K10570]
100372815  [KO:K02977]
100372970  [KO:K03175] [EC:2.3.2.27]
100373014  [KO:K10686] [EC:6.2.1.64]
100373333  [KO:K20217] [EC:2.3.2.23]
100373368  [KO:K10260]
100373373  [KO:K03872]
100373428  [KO:K10600]
100373529  TRIM37; tripartite motif-containing 37 [KO:K10608] [EC:2.3.2.27]
100373582  [KO:K10595] [EC:2.3.2.26]
100373734  [KO:K10583] [EC:2.3.2.23]
100373891  [KO:K10609]
100374153  [KO:K10579] [EC:2.3.2.34]
100374187  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
100374221  [KO:K10580] [EC:2.3.2.23]
100374346  [KO:K09561] [EC:2.3.2.27]
100374388  [KO:K10589] [EC:2.3.2.26]
100375002  [KO:K04506] [EC:2.3.2.27]
100375081  [KO:K10573] [EC:2.3.2.23]
100375394  [KO:K06689] [EC:2.3.2.23]
100375604  [KO:K10260]
100375688  [KO:K10684] [EC:6.2.1.45]
100375984  [KO:K06688] [EC:2.3.2.23]
100376269  [KO:K02927]
100376666  [KO:K10575] [EC:2.3.2.23]
100376707  [KO:K10140]
100376782  [KO:K03353]
100376800  [KO:K03347]
100376966  PRPF19; PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) [KO:K10599] [EC:2.3.2.27]
100377062  [KO:K10577]
100377067  [KO:K10260]
100377418  [KO:K03873]
100377457  [KO:K10140]
100378022  [KO:K10579] [EC:2.3.2.34]
100378101  [KO:K10571]
100378122  [KO:K10260]
100378182  [KO:K10598] [EC:5.2.1.8]
100378323  [KO:K02207] [EC:2.3.2.23]
100378644  [KO:K03363]
100378760  [KO:K04552] [EC:2.3.2.23]
100378904  [KO:K16060]
102800822  [KO:K10582] [EC:2.3.2.23]
102801733  [KO:K03875]
102801938  [KO:K10143] [EC:2.3.2.27]
102802702  [KO:K10576] [EC:2.3.2.23]
102802790  [KO:K10581] [EC:2.3.2.24]
102802899  [KO:K10588] [EC:2.3.2.26]
102803649  [KO:K10606] [EC:2.3.2.27]
102804654  [KO:K03175] [EC:2.3.2.27]
102805066  [KO:K03355]
102805627  [KO:K03351]
102806345  [KO:K03352]
102806562  [KO:K10582] [EC:2.3.2.23]
102806582  [KO:K10144] [EC:2.3.2.27]
102806613  [KO:K10447]
102807010  [KO:K10447]
102807412  [KO:K04416] [EC:2.7.11.25]
102808819  [KO:K10291]
102809418  [KO:K10447]
102809603  [KO:K03349]
102810060  [KO:K25228]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
sko03050  Proteasome
KO pathway
ko04120   

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