KEGG   PATHWAY: xtr00510
Entry
xtr00510                    Pathway                                
Name
N-Glycan biosynthesis - Xenopus tropicalis (tropical clawed frog)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
xtr00510  N-Glycan biosynthesis
xtr00510

Module
xtr_M00072  N-glycosylation by oligosaccharyltransferase [PATH:xtr00510]
xtr_M00073  N-glycan precursor trimming [PATH:xtr00510]
xtr_M00075  N-glycan biosynthesis, complex type [PATH:xtr00510]
Other DBs
GO: 0006487
Organism
Xenopus tropicalis (tropical clawed frog) [GN:xtr]
Gene
100036612  man2a1; alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
100038295  krtcap2; uncharacterized protein LOC100038295 [KO:K28202]
100124983  mgat4b; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
100127746  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
100145194  man1b1; endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
100145518  b4galt1.1; UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, gene 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
100145551  mgat5; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A [KO:K00744] [EC:2.4.1.155]
100145594  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D precursor [KO:K00738] [EC:2.4.1.145]
100145597  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor [KO:K12670]
100145625  alg13; putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1 [KO:K07432] [EC:2.4.1.141]
100216029  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
100379745  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X1 [KO:K07441] [EC:2.4.1.141]
100379785  magt1; magnesium transporter protein 1 [KO:K19478]
100380159  dolk; dolichol kinase [KO:K00902] [EC:2.7.1.108]
100485024  b4galt1l; beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
100485889  man1c1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IC isoform X2 [KO:K01230] [EC:3.2.1.113]
100486336  mgat4c; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
100486704  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
100487001  mgat5b; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
100487046  tusc3; tumor suppressor candidate 3 [KO:K19478]
100487450  dhrsx; dehydrogenase/reductase SDR family member on chromosome X isoform X2 [KO:K11170] [EC:1.1.1.441]
100487779  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
100489322  [KO:K00738] [EC:2.4.1.145]
100489718  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
100491268  st6gal1; beta-galactoside alpha-2,6-sialyltransferase 1 [KO:K00778] [EC:2.4.3.1]
100491314  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
100492356  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
100492491  mgat3; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X1 [KO:K00737] [EC:2.4.1.144]
100492576  ganab; neutral alpha-glucosidase AB isoform X2 [KO:K05546] [EC:3.2.1.207]
100493854  [KO:K00736] [EC:2.4.1.143]
100495934  stt3b; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
100497477  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X2 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
116406683  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
394898  alg11; GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [KO:K03844] [EC:2.4.1.131]
395031  rpn1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor [KO:K12666]
407846  st6gal2; beta-galactoside alpha-2,6-sialyltransferase 2 [KO:K00779] [EC:2.4.3.1]
407861  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
407913  fut8; alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
448369  b4galt3l1; UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 like 1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
448439  mgat2; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
448465  man2a2; alpha-mannosidase 2x [KO:K01231] [EC:3.2.1.114]
448472  alg5; dolichyl-phosphate beta-glucosyltransferase precursor [KO:K00729] [EC:2.4.1.117]
448722  tmem258; transmembrane protein 258 [KO:K26502]
496471  dpm3; dolichyl-phosphate mannosyltransferase polypeptide 3 [KO:K09659]
496815  mgat1; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00726] [EC:2.4.1.101]
496884  dpm1; dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
496948  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase precursor [KO:K03848] [EC:2.4.1.267]
496959  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 precursor [KO:K12667]
548388  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
548874  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase precursor [KO:K03847] [EC:2.4.1.260]
548946  alg10; dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
549051  dpm2; dolichol phosphate-mannose biosynthesis regulatory protein [KO:K09658]
549410  ostc; oligosaccharyltransferase complex subunit ostc [KO:K26501]
549418  b4galt1.2; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
549694  dad1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
549768  dolpp1; dolichyldiphosphatase 1 [KO:K07252] [EC:3.6.1.43]
549862  alg13l; ALG13, UDP-N-acetylglucosaminyltransferase subunit-like [KO:K07432] [EC:2.4.1.141]
594994  alg1; chitobiosyldiphosphodolichol beta-mannosyltransferase [KO:K03842] [EC:2.4.1.142]
595052  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
619362  mogs; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
733985  b4galt3l2; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
779994  srd5a3; polyprenol reductase precursor [KO:K12345] [EC:1.3.1.22 1.3.1.94]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
xtr00051  Fructose and mannose metabolism
xtr00511  Other glycan degradation
xtr00513  Various types of N-glycan biosynthesis
xtr00515  Mannose type O-glycan biosynthesis
xtr00520  Amino sugar and nucleotide sugar metabolism
xtr00533  Glycosaminoglycan biosynthesis - keratan sulfate
xtr00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
xtr00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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