KEGG   PATHWAY: aang04120
Entry
aang04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Anguilla anguilla (European eel)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
aang04120  Ubiquitin mediated proteolysis
aang04120

Other DBs
GO: 0016567
Organism
Anguilla anguilla (European eel) [GN:aang]
Gene
118206156  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
118206320  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
118206407  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
118206593  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
118206649  [KO:K04416] [EC:2.7.11.25]
118206729  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
118206731  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
118206743  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
118206792  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
118206831  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
118206892  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
118207065  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
118207141  [KO:K02207] [EC:2.3.2.23]
118207769  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
118208005  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
118208045  [KO:K03178] [EC:6.2.1.45]
118208492  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
118208630  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
118209437  cul3b; cullin-3b [KO:K03869]
118209608  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
118209689  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
118209804  [KO:K10612]
118209933  [KO:K22517] [EC:2.3.2.27]
118210005  rnf7; RING-box protein 2 isoform X1 [KO:K10611]
118210248  [KO:K10575] [EC:2.3.2.23]
118210381  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
118210394  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
118210412  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
118210730  [KO:K20217] [EC:2.3.2.23]
118211040  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
118211225  [KO:K03178] [EC:6.2.1.45]
118211230  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
118211380  [KO:K05632] [EC:2.3.2.26]
118211551  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
118211827  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
118211872  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
118211987  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
118212180  [KO:K10594] [EC:2.3.2.26]
118212239  skp2; S-phase kinase-associated protein 2 [KO:K03875]
118212292  ubc; polyubiquitin-C [KO:K08770]
118212438  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
118212502  ube2e2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
118212503  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
118212530  cdc26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
118212715  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
118212807  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
118212880  anapc2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
118212887  [KO:K07868]
118212920  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
118212986  [KO:K04552] [EC:2.3.2.23]
118213083  [KO:K16063] [EC:2.3.2.-]
118213643  [KO:K20217] [EC:2.3.2.23]
118213946  cdc16; cell division cycle protein 16 homolog [KO:K03353]
118214000  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
118214142  [KO:K10587] [EC:2.3.2.26]
118214515  [KO:K08285] [EC:2.3.2.27]
118214988  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
118215005  uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
118215042  [KO:K10582] [EC:2.3.2.23]
118215177  [KO:K04506] [EC:2.3.2.27]
118215252  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
118215287  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
118215371  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
118215435  ddb1; DNA damage-binding protein 1 [KO:K10610]
118215478  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
118216122  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
118216285  [KO:K10577]
118216500  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
118216602  [KO:K04678] [EC:2.3.2.26]
118216689  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
118216739  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
118216810  [KO:K09561] [EC:2.3.2.27]
118216970  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
118217145  elob; elongin-B [KO:K03873]
118217261  [KO:K04696]
118217386  [KO:K10577]
118217395  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
118218150  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
118218222  [KO:K06689] [EC:2.3.2.23]
118218226  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
118218306  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
118218320  birc6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
118218414  [KO:K02977]
118218505  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
118218515  [KO:K03868] [EC:2.3.2.32]
118218659  [KO:K10576] [EC:2.3.2.23]
118218676  [KO:K10580] [EC:2.3.2.23]
118219035  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
118219473  rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
118219586  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
118219669  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
118219708  [KO:K02977]
118220283  [KO:K03873]
118220408  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
118220536  mgrn1a; probable E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
118220601  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
118220605  [KO:K09561] [EC:2.3.2.27]
118220721  [KO:K10605] [EC:2.3.2.27]
118220762  [KO:K10585] [EC:2.3.2.23]
118221063  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
118221316  [KO:K03350]
118221545  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
118221617  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
118221955  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
118222557  [KO:K10447]
118222582  [KO:K10609]
118223049  [KO:K03094]
118223165  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
118223357  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
118223360  [KO:K20217] [EC:2.3.2.23]
118223384  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
118223425  [KO:K08285] [EC:2.3.2.27]
118223560  [KO:K10574] [EC:2.3.2.23]
118223625  [KO:K03362]
118223715  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
118223835  [KO:K10447]
118223879  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
118223915  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
118224074  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
118224103  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
118224208  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
118224376  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
118225180  [KO:K03347]
118225196  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
118225260  fzr1b; fizzy-related protein homolog isoform X1 [KO:K03364]
118225467  [KO:K05633] [EC:2.3.2.26]
118225582  [KO:K02927]
118225846  flj11011l; probable ubiquitin-conjugating enzyme E2 W-B isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
118225847  eloca; elongin C paralog a [KO:K03872]
118225867  ube3c; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
118225943  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
118226152  [KO:K02207] [EC:2.3.2.23]
118226182  fzr1a; fizzy/cell division cycle 20 related 1a isoform X1 [KO:K03364]
118226424  cul2; cullin-2 [KO:K03870]
118227187  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
118227353  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
118227557  [KO:K10260]
118227682  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
118227701  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
118227738  [KO:K10591] [EC:2.3.2.26]
118227742  [KO:K10582] [EC:2.3.2.23]
118227804  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
118227963  [KO:K06689] [EC:2.3.2.23]
118228109  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
118228153  det1; DET1 homolog isoform X1 [KO:K10571]
118228946  [KO:K02927]
118229095  cdc20; cell division cycle protein 20 homolog [KO:K03363]
118229186  aire; autoimmune regulator [KO:K10603]
118229580  [KO:K03869]
118229601  [KO:K02207] [EC:2.3.2.23]
118229801  [KO:K10590] [EC:2.3.2.26]
118229875  cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
118230026  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
118230057  pias4b; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS4b [KO:K16065] [EC:2.3.2.27]
118230239  keap1a; kelch-like ECH-associated protein 1A isoform X1 [KO:K10456]
118230359  [KO:K10584] [EC:2.3.2.23]
118230566  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
118230609  [KO:K03364]
118231572  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
118231685  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
118232035  [KO:K06689] [EC:2.3.2.23]
118232140  [KO:K10580] [EC:2.3.2.23]
118232153  [KO:K10260]
118232303  [KO:K04649] [EC:2.3.2.23]
118232788  [KO:K20217] [EC:2.3.2.23]
118233044  [KO:K03347]
118234111  [KO:K10593] [EC:2.3.2.26]
118234120  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
118234169  [KO:K05633] [EC:2.3.2.26]
118234503  [KO:K03872]
118234563  ube2w; probable ubiquitin-conjugating enzyme E2 W-A isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
118234824  [KO:K03362]
118234940  [KO:K10593] [EC:2.3.2.26]
118234955  skp1; S-phase kinase-associated protein 1 [KO:K03094]
118235014  [KO:K10573] [EC:2.3.2.23]
118235412  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
118235559  [KO:K04707] [EC:2.3.2.27]
118235649  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10573] [EC:2.3.2.23]
118236028  [KO:K06689] [EC:2.3.2.23]
118236078  [KO:K10609]
118236245  cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
118236282  cdc23; cell division cycle protein 23 homolog [KO:K03355]
118236421  [KO:K10602] [EC:2.3.2.27]
118236446  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
118236516  [KO:K10612]
118236536  [KO:K10447]
118236619  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
118236660  ubb; polyubiquitin-B [KO:K08770]
118236782  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
118237118  fbxo4; F-box only protein 4 [KO:K10291]
118237251  [KO:K07868]
118237275  ubox5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
118237547  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
aang03050  Proteasome
KO pathway
ko04120   

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