KEGG   PATHWAY: bta05340
Entry
bta05340                    Pathway                                
Name
Primary immunodeficiency - Bos taurus (cow)
Description
Primary immunodeficiencies (PIs) are a heterogeneous group of disorders, which affect cellular and humoral immunity or non-specific host defense mechanisms mediated by complement proteins, and cells such as phagocytes and natural killer (NK) cells. These disorders of the immune system cause increased susceptibility to infection, autoimmune disease, and malignancy. Most of PIs are due to genetic defects that affect cell maturation or function at different levels during hematopoiesis. Disruption of the cellular immunity is observed in patients with defects in T cells or both T and B cells. These cellular immunodeficiencies comprise 20% of all PIs. Disorders of humoral immunity affect B-cell differentiation and antibody production. They account for 70% of all PIs.
Class
Human Diseases; Immune disease
Pathway map
bta05340  Primary immunodeficiency
bta05340

Disease
H01725  Primary immunodeficiency disease
Organism
Bos taurus (cow) [GN:bta]
Gene
100125917  RFXANK; DNA-binding protein RFXANK [KO:K08062]
100300716  [KO:K06856]
100300806  [KO:K06856]
104968484  [KO:K06856]
112445051  [KO:K03161]
280712  ADA; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
281053  CD3D; T-cell surface glycoprotein CD3 delta chain precursor [KO:K06450]
281054  CD3E; T-cell surface glycoprotein CD3 epsilon chain precursor [KO:K06451]
281060  CD8A; T-cell surface glycoprotein CD8 alpha chain precursor [KO:K06458]
281586  TAP2; antigen peptide transporter 2 [KO:K05654] [EC:7.4.2.14]
281674  CD79A; B-cell antigen receptor complex-associated protein alpha chain precursor [KO:K06506]
281855  IKBKG; NF-kappa-B essential modulator [KO:K07210]
281862  IL2RG; cytokine receptor common subunit gamma precursor [KO:K05070]
282387  CD40LG; CD40 ligand [KO:K03161]
286849  CD40; tumor necrosis factor receptor superfamily member 5 precursor [KO:K03160]
407098  CD4; T-cell surface glycoprotein CD4 precursor [KO:K06454]
407152  PTPRC; receptor-type tyrosine-protein phosphatase C precursor [KO:K06478] [EC:3.1.3.48]
504509  ZAP70; tyrosine-protein kinase ZAP-70 [KO:K07360] [EC:2.7.10.2]
506302  RAG1; V(D)J recombination-activating protein 1 [KO:K10628] [EC:2.3.2.27]
507026  ICOS; inducible T-cell costimulator precursor [KO:K06713]
508633  CD8B; T-cell surface glycoprotein CD8 beta chain precursor [KO:K06459]
508720  CIITA; MHC class II transactivator isoform X1 [KO:K08060] [EC:2.7.11.1]
508890  LCK; tyrosine-protein kinase Lck [KO:K05856] [EC:2.7.10.2]
510393  BLNK; B-cell linker protein [KO:K07371]
511381  UNG; uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
517359  CD19; B-lymphocyte antigen CD19 precursor [KO:K06465]
517688  ORAI1; calcium release-activated calcium channel protein 1 [KO:K16056]
517886  DCLRE1C; protein artemis [KO:K10887] [EC:3.1.-.-]
521554  IL7R; interleukin-7 receptor subunit alpha precursor [KO:K05072]
524810  [KO:K06856]
524959  TAP1; antigen peptide transporter 1 [KO:K05653] [EC:7.4.2.14]
533459  BTK; tyrosine-protein kinase BTK [KO:K07370] [EC:2.7.10.2]
538276  JAK3; tyrosine-protein kinase JAK3 [KO:K11218] [EC:2.7.10.2]
539884  RFX5; DNA-binding protein RFX5 [KO:K08061]
539888  AICDA; single-stranded DNA cytosine deaminase [KO:K10989] [EC:3.5.4.38]
540760  RFXAP; regulatory factor X-associated protein [KO:K08063]
617948  TNFRSF13B; tumor necrosis factor receptor superfamily member 13B isoform X1 [KO:K05150]
618516  TNFRSF13C; tumor necrosis factor receptor superfamily member 13C [KO:K05151]
618733  [KO:K05654] [EC:7.4.2.14]
782387  RAG2; V(D)J recombination-activating protein 2 [KO:K10988]
784775  AIRE; autoimmune regulator isoform X2 [KO:K10603]
Reference
  Authors
Cunningham-Rundles C, Ponda PP.
  Title
Molecular defects in T- and B-cell primary immunodeficiency diseases.
  Journal
Nat Rev Immunol 5:880-92 (2005)
DOI:10.1038/nri1713
Reference
  Authors
Ballow M.
  Title
Primary immunodeficiency disorders: antibody deficiency.
  Journal
J Allergy Clin Immunol 109:581-91 (2002)
DOI:10.1067/mai.2002.122466
Reference
  Authors
Marodi L, Notarangelo LD.
  Title
Immunological and genetic bases of new primary immunodeficiencies.
  Journal
Nat Rev Immunol 7:851-61 (2007)
DOI:10.1038/nri2195
Reference
  Authors
Geha RS, Notarangelo LD, Casanova JL, Chapel H, Conley ME, Fischer A, Hammarstrom L, Nonoyama S, Ochs HD, Puck JM, Roifman C, Seger R, Wedgwood J.
  Title
Primary immunodeficiency diseases: an update from the International Union of Immunological Societies Primary Immunodeficiency Diseases Classification Committee.
  Journal
J Allergy Clin Immunol 120:776-94 (2007)
DOI:10.1016/j.jaci.2007.08.053
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases.
  Journal
Immunity 27:835-45 (2007)
DOI:10.1016/j.immuni.2007.11.012
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases: a perspective.
  Journal
Nat Immunol 5:23-30 (2004)
DOI:10.1038/ni1023
Reference
  Authors
Buckley RH.
  Title
Primary immunodeficiency diseases due to defects in lymphocytes.
  Journal
N Engl J Med 343:1313-24 (2000)
DOI:10.1056/NEJM200011023431806
Reference
  Authors
Fischer A, Le Deist F, Hacein-Bey-Abina S, Andre-Schmutz I, Basile Gde S, de Villartay JP, Cavazzana-Calvo M.
  Title
Severe combined immunodeficiency. A model disease for molecular immunology and therapy.
  Journal
Immunol Rev 203:98-109 (2005)
DOI:10.1111/j.0105-2896.2005.00223.x
Reference
  Authors
de Villartay JP, Fischer A, Durandy A.
  Title
The mechanisms of immune diversification and their disorders.
  Journal
Nat Rev Immunol 3:962-72 (2003)
DOI:10.1038/nri1247
Related
pathway
bta04640  Hematopoietic cell lineage
bta04660  T cell receptor signaling pathway
bta04662  B cell receptor signaling pathway
KO pathway
ko05340   

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