KEGG   PATHWAY: clv04120
Entry
clv04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Columba livia (rock pigeon)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
clv04120  Ubiquitin mediated proteolysis
clv04120

Other DBs
GO: 0016567
Organism
Columba livia (rock pigeon) [GN:clv]
Gene
102083491  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
102083493  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
102083555  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
102083744  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X5 [KO:K10604] [EC:2.3.2.27]
102083767  [KO:K20217] [EC:2.3.2.23]
102083770  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
102083888  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
102083939  DDB1; DNA damage-binding protein 1 [KO:K10610]
102083940  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
102083944  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
102083982  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
102084040  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
102084273  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
102084274  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
102084287  CUL2; cullin-2 [KO:K03870]
102084366  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
102084568  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
102084669  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
102084967  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
102085003  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
102085016  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
102085079  AIRE; autoimmune regulator [KO:K10603]
102085125  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
102085264  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X2 [KO:K06643] [EC:2.3.2.27]
102085285  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102085357  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
102085414  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
102085425  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
102085604  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
102085742  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
102086285  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
102086390  CUL5; cullin-5 [KO:K10612]
102086437  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
102086490  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
102086692  ANAPC16; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 16 [KO:K25229]
102086693  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
102087122  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
102087151  DDB2; DNA damage-binding protein 2 isoform X2 [KO:K10140]
102087209  FBXW7; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 7 [KO:K10260]
102087279  UBOX5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
102087906  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
102088054  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
102088122  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
102088456  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X3 [KO:K10614] [EC:2.3.2.26]
102088851  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
102089059  CUL4B; cullin-4B [KO:K10609]
102089090  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
102089135  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X2 [KO:K10591] [EC:2.3.2.26]
102089383  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
102089511  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
102089538  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
102089742  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
102089776  CUL3; cullin-3 [KO:K03869]
102089847  [KO:K10579] [EC:2.3.2.34]
102090095  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
102090104  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
102090127  ELOC; elongin-C [KO:K03872]
102090243  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
102090282  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
102090283  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
102090304  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102090342  [KO:K16060]
102090455  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
102090576  DET1; DET1 homolog [KO:K10571]
102090639  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
102090825  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
102090986  FBXO2; F-box only protein 2 [KO:K10099]
102091320  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102091334  HERC4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
102091391  [KO:K04552] [EC:2.3.2.23]
102091514  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
102091709  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
102092050  [KO:K02207] [EC:2.3.2.23]
102092289  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
102092369  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102092456  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
102092525  CDC20; cell division cycle protein 20 homolog [KO:K03363]
102092543  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X2 [KO:K10686] [EC:6.2.1.64]
102092950  CDC16; cell division cycle protein 16 homolog [KO:K03353]
102093303  UBE2O; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
102093465  FZR1; fizzy-related protein homolog [KO:K03364]
102093584  CUL1; cullin-1 [KO:K03347]
102093588  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
102093629  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
102093737  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
102093842  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X2 [KO:K10687] [EC:2.3.2.34]
102093960  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
102094112  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
102094136  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X3 [KO:K16065] [EC:2.3.2.27]
102094230  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
102094270  UBE4B; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
102094418  CUL4A; cullin-4A [KO:K10609]
102094521  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X2 [KO:K10143] [EC:2.3.2.27]
102094573  [KO:K20217] [EC:2.3.2.23]
102094684  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
102094938  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
102095059  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
102095084  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
102095362  [KO:K10054] [EC:2.3.2.-]
102095608  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
102095768  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
102095842  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X2 [KO:K03868] [EC:2.3.2.32]
102096287  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
102096361  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
102096418  UBB; polyubiquitin-B [KO:K08770]
102096530  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
102096759  CDC23; cell division cycle protein 23 homolog [KO:K03355]
102096838  TRIM32; E3 ubiquitin-protein ligase TRIM32 isoform X1 [KO:K10607] [EC:2.3.2.27]
102096885  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
102096968  [KO:K10595] [EC:2.3.2.26]
102097033  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
102097371  [KO:K10260]
102097506  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
102097533  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
102097578  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
102097605  [KO:K22517] [EC:2.3.2.27]
102097744  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102097987  UBE3A; ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
102098052  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
102098392  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
102098624  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102098641  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
102098835  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
102098886  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X6 [KO:K13305] [EC:2.3.2.26]
106146001  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
110355096  [KO:K10054] [EC:2.3.2.-]
110359843  [KO:K10447]
110366281  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
clv03050  Proteasome
KO pathway
ko04120   

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