KEGG   PATHWAY: cpoc04120
Entry
cpoc04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Cavia porcellus (domestic guinea pig)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cpoc04120  Ubiquitin mediated proteolysis
cpoc04120

Other DBs
GO: 0016567
Organism
Cavia porcellus (domestic guinea pig) [GN:cpoc]
Gene
100135616  Skp1; S-phase kinase-associated protein 1 [KO:K03094]
100286786  Ubc; polyubiquitin-B [KO:K04551]
100286787  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100301562  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X6 [KO:K13305] [EC:2.3.2.26]
100322881  Fbxo2; F-box only protein 2 [KO:K10099]
100712847  Rhobtb1; rho-related BTB domain-containing protein 1 isoform X3 [KO:K07868]
100713146  Elob; elongin-B [KO:K03873]
100713340  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100713574  Birc3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
100713871  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
100714025  Trim37; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
100714064  Ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100714185  Cul4b; cullin-4B isoform X1 [KO:K10609]
100714226  Anapc16; anaphase-promoting complex subunit 16 isoform X3 [KO:K25229]
100714763  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
100714794  Fzr1; fizzy-related protein homolog [KO:K03364]
100715134  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
100715223  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100715527  Birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
100715778  Xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100715948  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
100715997  Fbxw11; F-box/WD repeat-containing protein 11 [KO:K03362]
100716372  Ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
100716416  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
100716878  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
100716983  Ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100717146  Cul5; cullin-5 [KO:K10612]
100717224  Herc1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
100717289  Herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
100717320  Stub1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
100717486  [KO:K10578] [EC:2.3.2.23]
100717708  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
100718459  Ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
100718545  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
100718565  Cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
100718605  Pias2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
100718649  Sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100718665  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100718845  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100718857  Cblb; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
100718900  Ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100719212  Uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
100719482  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
100719722  Ubox5; RING finger protein 37 isoform X1 [KO:K10600]
100719789  [KO:K06689] [EC:2.3.2.23]
100720230  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
100720235  Cul2; cullin-2 [KO:K03870]
100720312  Uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
100720432  Ube2r2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
100720574  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
100720620  [KO:K06689] [EC:2.3.2.23]
100720696  Anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
100720705  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
100720832  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
100720846  Ubr5; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
100720892  Uba3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
100720916  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X2 [KO:K10604] [EC:2.3.2.27]
100720918  Ube3b; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100721172  Ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
100721341  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
100721764  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X2 [KO:K10582] [EC:2.3.2.23]
100722057  Prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100722134  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
100722207  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
100722231  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
100722339  Brca1; breast cancer type 1 susceptibility protein isoform X2 [KO:K10605] [EC:2.3.2.27]
100722422  Ubb; polyubiquitin-B [KO:K04551]
100722511  [KO:K20217] [EC:2.3.2.23]
100722589  Huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
100722637  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100722976  Syvn1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
100722988  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
100723029  Cdc34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
100723450  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100723456  Map3k1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100723966  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X2 [KO:K10581] [EC:2.3.2.24]
100724128  [KO:K03873]
100724177  Ddb1; DNA damage-binding protein 1 [KO:K10610]
100724288  Itch; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
100724447  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100724550  Prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
100724559  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
100724684  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
100725041  Cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
100725075  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100725088  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
100725418  Cdc16; cell division cycle protein 16 homolog isoform X2 [KO:K03353]
100725700  [KO:K16063] [EC:2.3.2.-]
100725716  Anapc1; anaphase-promoting complex subunit 1 isoform X2 [KO:K03348]
100726213  Ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100726252  Anapc15; anaphase-promoting complex subunit 15 isoform X3 [KO:K25228]
100726349  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100726538  Ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
100726684  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100726899  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
100727053  Cul1; cullin-1 [KO:K03347]
100727315  [KO:K10580] [EC:2.3.2.23]
100727679  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
100727733  Ube2u; ubiquitin-conjugating enzyme E2 U isoform X3 [KO:K10584] [EC:2.3.2.23]
100728170  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
100728351  Cop1; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
100728363  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
100728652  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
100728726  Ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
100728842  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
100729230  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
100729250  Ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100729326  Cul3; cullin-3 [KO:K03869]
100729386  Trip12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
100729421  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
100729437  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
100729680  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
100729701  Eloc; elongin-C [KO:K03872]
100729771  Klhl9; kelch-like protein 9 [KO:K10447]
100729878  Pias1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
100729880  Aire; autoimmune regulator isoform X1 [KO:K10603]
100729908  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100730107  Btrc; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 1A [KO:K03362]
100730229  Ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
100730250  Ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100730313  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
100730511  Ube3a; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
100730651  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
100730907  Ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
100731006  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100731091  Cdc27; cell division cycle protein 27 homolog isoform X3 [KO:K03350]
100731329  [KO:K10595] [EC:2.3.2.26]
100731595  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100731803  [KO:K16063] [EC:2.3.2.-]
100732687  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
100732729  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
100732779  Ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
100732872  Det1; DET1 homolog isoform X1 [KO:K10571]
100733068  Cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
100734019  Ppil2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
100734273  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100734383  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
100734505  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
100734512  Smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
100734699  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100734834  Cul7; cullin-7 isoform X1 [KO:K10613]
100735307  Rnf7; RING-box protein 2 isoform X2 [KO:K10611]
100735665  Birc6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
100735700  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
100735912  Klhl13; kelch-like protein 13 isoform X4 [KO:K10447]
100735926  Fbxo4; F-box only protein 4 [KO:K10291]
100736154  Cul4a; cullin-4A [KO:K10609]
106026468  [KO:K10580] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cpoc03050  Proteasome
KO pathway
ko04120   

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