KEGG   PATHWAY: leri04622
Entry
leri04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Leucoraja erinaceus (little skate)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
leri04622  RIG-I-like receptor signaling pathway
leri04622

Organism
Leucoraja erinaceus (little skate) [GN:leri]
Gene
129693903  [KO:K03173] [EC:2.3.2.27]
129694045  [KO:K10030]
129694046  [KO:K10030]
129694140  [KO:K10030]
129694202  [KO:K03173] [EC:2.3.2.27]
129694472  [KO:K10030]
129694473  [KO:K10030]
129694589  [KO:K03156]
129694591  [KO:K03156]
129694839  [KO:K05425]
129695487  rigi; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
129696539  map3k1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
129696909  atg5; autophagy protein 5 isoform X1 [KO:K08339]
129697362  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
129698825  [KO:K12650]
129698833  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
129698865  [KO:K04398] [EC:3.4.22.61]
129698953  [KO:K04400] [EC:3.4.22.63]
129699899  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
129700134  [KO:K10030]
129700140  [KO:K10030]
129700151  [KO:K10030]
129700160  [KO:K10030]
129700171  [KO:K10030]
129700231  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
129700298  [KO:K10030]
129700427  [KO:K10030]
129700569  traf3; TNF receptor-associated factor 3 [KO:K03174]
129701715  sting1; stimulator of interferon genes protein [KO:K12654]
129701737  [KO:K10030]
129701740  [KO:K04440] [EC:2.7.11.24]
129701885  [KO:K05425]
129702259  [KO:K02580]
129702703  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
129703696  il12a; interleukin-12 subunit alpha [KO:K05406]
129704131  [KO:K10030]
129704137  [KO:K10030]
129704146  [KO:K10030]
129704781  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
129705036  cylda; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
129705160  tradd; LOW QUALITY PROTEIN: tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
129705830  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
129705831  [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
129705871  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
129706124  [KO:K08601] [EC:3.4.19.12]
129706378  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
129706705  [KO:K27391]
129707416  znfx1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
129707782  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
129707783  mapk11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
129708079  ripk1l; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
129708485  trim25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
129708572  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K05410] [EC:2.7.11.10]
129708685  [KO:K04441] [EC:2.7.11.24]
129708686  [KO:K04441] [EC:2.7.11.24]
129708819  sike1; suppressor of IKBKE 1 [KO:K12656]
129710038  [KO:K05414]
129710039  [KO:K05414]
129710040  [KO:K05414]
129710041  [KO:K05414]
129710045  [KO:K05414]
129710046  [KO:K05414]
129710168  tbkbp1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
129710197  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
129710396  [KO:K05414]
129710398  [KO:K05414]
129710399  [KO:K05414]
129710400  [KO:K05414]
129710401  [KO:K05414]
129711946  [KO:K03173] [EC:2.3.2.27]
129712144  azi2; 5-azacytidine-induced protein 2 [KO:K12651]
129712260  nlrx1; NLR family member X1 [KO:K12653]
129712925  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
129712993  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
129713371  ikbkb; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
129714099  [KO:K03174]
129714112  [KO:K04734]
129714114  [KO:K02581]
129714489  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
129715155  [KO:K12655] [EC:3.4.19.12]
129715307  adar; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
129715772  atg12; ubiquitin-like protein ATG12 [KO:K08336]
129715888  [KO:K03156]
129716057  [KO:K10030]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
leri04010  MAPK signaling pathway
leri04120  Ubiquitin mediated proteolysis
leri04210  Apoptosis
KO pathway
ko04622   

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