KEGG   PATHWAY: mdo04120
Entry
mdo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Monodelphis domestica (gray short-tailed opossum)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mdo04120  Ubiquitin mediated proteolysis
mdo04120

Other DBs
GO: 0016567
Organism
Monodelphis domestica (gray short-tailed opossum) [GN:mdo]
Gene
100009794  ANAPC16; anaphase promoting complex subunit 16 [KO:K25229]
100009846  UBE2I; ubiquitin conjugating enzyme E2 I [KO:K10577]
100010055  TRAF6; TNF receptor associated factor 6 [KO:K03175] [EC:2.3.2.27]
100010404  FZR1; fizzy/cell division cycle 20 related 1 [KO:K03364]
100010537  HUWE1; HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase [KO:K10592] [EC:2.3.2.26]
100010737  TRIM37; tripartite motif containing 37 [KO:K10608] [EC:2.3.2.27]
100010741  [KO:K16060]
100010782  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
100010813  HERC4; HECT and RLD domain containing E3 ubiquitin protein ligase 4 [KO:K10615] [EC:2.3.2.26]
100011012  UBA2; ubiquitin like modifier activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
100011407  UBE2R2; ubiquitin conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
100011673  [KO:K10580] [EC:2.3.2.23]
100011849  UBA3; ubiquitin like modifier activating enzyme 3 [KO:K10686] [EC:6.2.1.64]
100011853  UBE2N; ubiquitin conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100011856  UBE2A; ubiquitin conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100011932  CBLB; Cbl proto-oncogene B [KO:K22517] [EC:2.3.2.27]
100012223  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
100012311  UBE2Q2; ubiquitin conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
100012532  UBA52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927]
100012710  KEAP1; kelch like ECH associated protein 1 [KO:K10456]
100012777  TRIM32; tripartite motif containing 32 [KO:K10607] [EC:2.3.2.27]
100012780  PIAS3; protein inhibitor of activated STAT 3 [KO:K16064] [EC:2.3.2.-]
100012835  UBA1; ubiquitin like modifier activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100012855  ANAPC4; anaphase promoting complex subunit 4 [KO:K03351]
100012869  UBE2G2; ubiquitin conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
100012977  UBA6; ubiquitin like modifier activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
100013023  UBE3A; ubiquitin protein ligase E3A [KO:K10587] [EC:2.3.2.26]
100013043  ANAPC15; anaphase promoting complex subunit 15 [KO:K25228]
100013348  CUL1; cullin 1 [KO:K03347]
100013521  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
100013553  DET1; de-etiolated homolog 1 (Arabidopsis) [KO:K10571]
100013744  UBE2D1; ubiquitin conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100013833  RNF7; ring finger protein 7 [KO:K10611]
100014089  TRIP12; thyroid hormone receptor interactor 12 [KO:K10590] [EC:2.3.2.26]
100014313  UBE2G1; ubiquitin conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100014364  UBE2D3; ubiquitin conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
100014677  UBE2B; ubiquitin conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100014810  SKP1; S-phase kinase associated protein 1 [KO:K03094]
100015239  CUL3; cullin 3 [KO:K03869]
100015280  KLHL13; kelch like family member 13 [KO:K10447]
100015651  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
100015868  ANAPC5; anaphase promoting complex subunit 5 [KO:K03352]
100015909  HERC3; HECT and RLD domain containing E3 ubiquitin protein ligase 3 [KO:K10614] [EC:2.3.2.26]
100016016  CDC16; cell division cycle 16 [KO:K03353]
100016157  DDB2; damage specific DNA binding protein 2 [KO:K10140]
100016215  ANAPC13; anaphase promoting complex subunit 13 [KO:K12456]
100016483  UBE2C; ubiquitin conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100016493  CUL4A; cullin 4A [KO:K10609]
100016498  SIAH1; siah E3 ubiquitin protein ligase 1 [KO:K04506] [EC:2.3.2.27]
100016525  PPIL2; peptidylprolyl isomerase like 2 [KO:K10598] [EC:5.2.1.8]
100016572  SAE1; SUMO1 activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100016651  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
100016776  UBE3C; ubiquitin protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100016923  CDC34; cell division cycle 34 [KO:K02207] [EC:2.3.2.23]
100016998  STUB1; STIP1 homology and U-box containing protein 1 [KO:K09561] [EC:2.3.2.27]
100017074  HERC1; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [KO:K10594] [EC:2.3.2.26]
100017483  SYVN1; synoviolin 1 [KO:K10601] [EC:2.3.2.27]
100017913  UBE2J2; ubiquitin conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100017992  UBE2QL1; ubiquitin conjugating enzyme E2 Q family like 1 [KO:K10582] [EC:2.3.2.23]
100018021  FBXO4; F-box protein 4 [KO:K10291]
100018154  CUL2; cullin 2 [KO:K03870]
100018227  MID1; midline 1 [KO:K08285] [EC:2.3.2.27]
100018269  PIAS2; protein inhibitor of activated STAT 2 [KO:K16063] [EC:2.3.2.-]
100018279  ELOB; elongin B [KO:K03873]
100018509  FBXO2; F-box protein 2 [KO:K10099]
100018851  RHOBTB1; Rho related BTB domain containing 1 [KO:K07868]
100019010  ANAPC10; anaphase promoting complex subunit 10 [KO:K03357]
100019390  MGRN1; mahogunin ring finger 1 [KO:K10604] [EC:2.3.2.27]
100019977  UBE2E3; ubiquitin conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100020178  NEDD4; neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase [KO:K10591] [EC:2.3.2.26]
100020206  UBE2H; ubiquitin conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
100020368  CUL4B; cullin 4B [KO:K10609]
100020392  ANAPC7; anaphase promoting complex subunit 7 [KO:K03354]
100020421  SKP2; S-phase kinase associated protein 2 [KO:K03875]
100020484  WWP2; WW domain containing E3 ubiquitin protein ligase 2 [KO:K05630] [EC:2.3.2.26]
100020755  UBE2Q1; ubiquitin conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
100021140  UBE2Z; ubiquitin conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100021198  [KO:K08770]
100021398  MDM2; MDM2 proto-oncogene [KO:K06643] [EC:2.3.2.27]
100021432  RFWD2; ring finger and WD repeat domain 2 [KO:K10143] [EC:2.3.2.27]
100021792  [KO:K10140]
100021920  UBE2K; ubiquitin conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
100022149  NEDD4L; neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase [KO:K13305] [EC:2.3.2.26]
100022245  PIAS4; protein inhibitor of activated STAT 4 [KO:K16065] [EC:2.3.2.27]
100023212  FBXW8; F-box and WD repeat domain containing 8 [KO:K10264]
100023440  ANAPC2; anaphase promoting complex subunit 2 [KO:K03349]
100023491  UBE2F; ubiquitin conjugating enzyme E2 F (putative) [KO:K10687] [EC:2.3.2.34]
100023698  CBLC; Cbl proto-oncogene C [KO:K22518] [EC:2.3.2.27]
100024151  RCHY1; ring finger and CHY zinc finger domain containing 1 [KO:K10144] [EC:2.3.2.27]
100024305  VHL; von Hippel-Lindau tumor suppressor [KO:K03871]
100024477  UBE4B; ubiquitination factor E4B [KO:K10597] [EC:2.3.2.27]
100024546  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
100024960  CDC23; cell division cycle 23 [KO:K03355]
100025132  UBE4A; ubiquitination factor E4A [KO:K10596] [EC:2.3.2.27]
100025259  NHLRC1; NHL repeat containing E3 ubiquitin protein ligase 1 [KO:K10602] [EC:2.3.2.27]
100025278  CDC27; cell division cycle 27 [KO:K03350]
100025295  BIRC7; baculoviral IAP repeat containing 7 [KO:K16061]
100025425  UBE2L6; ubiquitin conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
100025534  ANAPC11; anaphase promoting complex subunit 11 [KO:K03358]
100025703  UBE2D2; ubiquitin conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
100025732  UBE2J1; ubiquitin conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100025757  PIAS1; protein inhibitor of activated STAT 1 [KO:K04706] [EC:2.3.2.-]
100025846  UBE2D4; ubiquitin conjugating enzyme E2 D4 (putative) [KO:K06689] [EC:2.3.2.23]
100025870  AIRE; autoimmune regulator [KO:K10603]
100026656  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100026714  UBOX5; U-box domain containing 5 [KO:K10600]
100027038  PRPF19; pre-mRNA processing factor 19 [KO:K10599] [EC:2.3.2.27]
100027051  BIRC6; baculoviral IAP repeat containing 6 [KO:K10586] [EC:2.3.2.23]
100027066  [KO:K10447]
100027105  [KO:K10447]
100027158  DDB1; damage specific DNA binding protein 1 [KO:K10610]
100027495  [KO:K03364]
100027828  UBE2L3; ubiquitin conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100028060  ELOC; elongin C [KO:K03872]
100028084  UBA7; ubiquitin like modifier activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
100028124  UBE2W; ubiquitin conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100028483  UBE3B; ubiquitin protein ligase E3B [KO:K10588] [EC:2.3.2.26]
100029107  WWP1; WW domain containing E3 ubiquitin protein ligase 1 [KO:K05633] [EC:2.3.2.26]
100029233  [KO:K16063] [EC:2.3.2.-]
100029464  PML; promyelocytic leukemia [KO:K10054] [EC:2.3.2.-]
100029508  BTRC; beta-transducin repeat containing E3 ubiquitin protein ligase [KO:K03362]
100029596  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
100030651  RHOBTB2; Rho related BTB domain containing 2 [KO:K07868]
100030880  UBR5; ubiquitin protein ligase E3 component n-recognin 5 [KO:K10593] [EC:2.3.2.26]
100031108  ANAPC1; anaphase promoting complex subunit 1 [KO:K03348]
100031160  FBXW11; F-box and WD repeat domain containing 11 [KO:K03362]
100031184  CBL; Cbl proto-oncogene [KO:K04707] [EC:2.3.2.27]
100031458  UBE2E1; ubiquitin conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
100032038  RPS27A; ribosomal protein S27a [KO:K02977]
100032065  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100032223  ERCC8; ERCC excision repair 8, CSA ubiquitin ligase complex subunit [KO:K10570]
100032356  ITCH; itchy E3 ubiquitin protein ligase [KO:K05632] [EC:2.3.2.26]
100032484  CUL5; cullin 5 [KO:K10612]
100032502  PARK2; parkin RBR E3 ubiquitin protein ligase [KO:K04556] [EC:2.3.2.31]
100032761  UBE2S; ubiquitin conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100033325  FANCL; Fanconi anemia complementation group L [KO:K10606] [EC:2.3.2.27]
100616780  [KO:K04694]
100617365  FBXW7; F-box and WD repeat domain containing 7 [KO:K10260]
100619214  UBE2O; ubiquitin conjugating enzyme E2 O [KO:K10581] [EC:2.3.2.24]
100619355  [KO:K02927]
103092729  [KO:K10447]
103092862  [KO:K06643] [EC:2.3.2.27]
103096205  UBE2U; ubiquitin conjugating enzyme E2 U (putative) [KO:K10584] [EC:2.3.2.23]
554178  BRCA1; BRCA1, DNA repair associated [KO:K10605] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mdo03050  Proteasome
KO pathway
ko04120   

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