KEGG   PATHWAY: afz04144
Entry
afz04144                    Pathway                                
Name
Endocytosis - Antechinus flavipes (yellow-footed antechinus)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
afz04144  Endocytosis
afz04144

Other DBs
GO: 0006897
Organism
Antechinus flavipes (yellow-footed antechinus) [GN:afz]
Gene
127549772  ADP-ribosylation factor 6 [KO:K07941]
127538195  phosphatidylinositol 4-phosphate 5-kinase type-1 beta [KO:K00889] [EC:2.7.1.68]
127544975  phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform X1 [KO:K00889] [EC:2.7.1.68]
127561231  putative PIP5K1A and PSMD4-like protein [KO:K00889] [EC:2.7.1.68]
127550834  phosphatidylinositol 4-phosphate 5-kinase-like protein 1 isoform X1 [KO:K13712] [EC:2.7.1.68]
127552875  phospholipase D1 [KO:K01115] [EC:3.1.4.4]
127560933  phospholipase D2 [KO:K01115] [EC:3.1.4.4]
127562900  dynamin-3 isoform X1 [KO:K01528] [EC:3.6.5.5]
127550845  dynamin-1 isoform X1 [KO:K01528] [EC:3.6.5.5]
127544744  dynamin-2 isoform X1 [KO:K23484] [EC:3.6.5.5]
127561091  clathrin light chain A isoform X1 [KO:K04644]
127550256  clathrin light chain B isoform X1 [KO:K04645]
127545724  clathrin heavy chain 2 isoform X1 [KO:K04646]
127559959  clathrin heavy chain 1 isoform X1 [KO:K04646]
127541353  AP-2 complex subunit alpha-2 [KO:K11824]
127556593  AP-2 complex subunit alpha-1 isoform X1 [KO:K11824]
127559002  AP-2 complex subunit beta isoform X1 [KO:K11825]
127563389  AP-2 complex subunit mu [KO:K11826]
127556267  AP-2 complex subunit sigma isoform X1 [KO:K11827]
127556238  EH domain-containing protein 2 [KO:K12469]
127541471  TGF-beta receptor type-1 [KO:K04674] [EC:2.7.11.30]
127538005  TGF-beta receptor type-2 [KO:K04388] [EC:2.7.11.30]
127563321  zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679]
127559099  zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679]
127551992  protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
127543521  mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500]
127551234  mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605]
127554186  transferrin receptor protein 1 [KO:K06503]
127553324  epidermal growth factor receptor [KO:K04361] [EC:2.7.10.1]
127539873  platelet-derived growth factor receptor alpha [KO:K04363] [EC:2.7.10.1]
127551650  fibroblast growth factor receptor 2 isoform X1 [KO:K05093] [EC:2.7.10.1]
127541109  fibroblast growth factor receptor 3 isoform X1 [KO:K05094] [EC:2.7.10.1]
127550271  fibroblast growth factor receptor 4 [KO:K05095] [EC:2.7.10.1]
127551347  insulin-like growth factor 1 receptor [KO:K05087] [EC:2.7.10.1]
127554025  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
127556351  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
127553983  SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470]
127541767  endophilin-A2-like [KO:K11247]
127551449  endophilin-A3 [KO:K11247]
127544939  endophilin-A2 isoform X1 [KO:K11247]
127555049  endophilin-A1 [KO:K11247]
127563059  endophilin-B1 isoform X1 [KO:K11248]
127550875  endophilin-B2 isoform X1 [KO:K21269]
127550089  amphiphysin isoform X1 [KO:K12562]
127554297  myc box-dependent-interacting protein 1 isoform X1 [KO:K12562]
127556735  epsin-1 isoform X1 [KO:K12471]
127560059  epsin-3 isoform X1 [KO:K12471]
127561362  epsin-2 isoform X1 [KO:K12471]
127563329  epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472]
127545049  epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472]
127554669  spartin isoform X1 [KO:K19366]
127551180  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
127543470  E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
127564477  E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
127538796  E3 ubiquitin-protein ligase Mdm2-like [KO:K06643] [EC:2.3.2.27]
127542124  LOW QUALITY PROTEIN: TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
127538910  E3 ubiquitin-protein ligase NRDP1 isoform X1 [KO:K11981] [EC:2.3.2.27]
127540734  E3 ubiquitin-protein ligase NRDP1-like [KO:K11981] [EC:2.3.2.27]
127550337  E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
127563409  E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
127560585  E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
127544255  NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
127544754  low-density lipoprotein receptor isoform X1 [KO:K12473]
127555690  low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474]
127556799  LOW QUALITY PROTEIN: disabled homolog 2 [KO:K12475]
127564552  C-C chemokine receptor type 5-like [KO:K04180]
127564643  C-C chemokine receptor type 5-like [KO:K04180]
127557755  C-X-C chemokine receptor type 1 [KO:K04175]
127557757  C-X-C chemokine receptor type 2-like [KO:K05050]
127554363  C-X-C chemokine receptor type 4 [KO:K04189]
127552998  rhodopsin kinase GRK7 [KO:K00909] [EC:2.7.11.14]
127553499  rhodopsin kinase GRK1 [KO:K00909] [EC:2.7.11.14]
127541284  beta-adrenergic receptor kinase 1 [KO:K00910] [EC:2.7.11.15]
127545614  beta-adrenergic receptor kinase 2 [KO:K00910] [EC:2.7.11.15]
127541253  G protein-coupled receptor kinase 4 [KO:K08291] [EC:2.7.11.16]
127550285  G protein-coupled receptor kinase 6 isoform X1 [KO:K08291] [EC:2.7.11.16]
127551629  G protein-coupled receptor kinase 5 [KO:K08291] [EC:2.7.11.16]
127546692  beta-arrestin-1-like [KO:K04439]
127560926  beta-arrestin-2 [KO:K04439]
127555072  beta-arrestin-1 isoform X1 [KO:K04439]
127537950  actin nucleation-promoting factor WASL isoform X1 [KO:K23612]
127548146  actin-related protein 2 isoform X1 [KO:K17260]
127564185  actin-related protein 3B isoform X1 [KO:K18584]
127554344  actin-related protein 3 [KO:K18584]
127554901  LOW QUALITY PROTEIN: actin-related protein 3-like [KO:K18584]
127563333  actin-related protein 2/3 complex subunit 1B [KO:K05757]
127563387  actin-related protein 2/3 complex subunit 1A isoform X1 [KO:K05757]
127553115  actin-related protein 2/3 complex subunit 2 [KO:K05758]
127545459  actin-related protein 2/3 complex subunit 3 [KO:K05756]
127551785  actin-related protein 2/3 complex subunit 4 [KO:K05755]
127562810  actin-related protein 2/3 complex subunit 5 [KO:K05754]
127550572  actin-related protein 2/3 complex subunit 5-like protein [KO:K05754]
127539311  WAS/WASL-interacting protein family member 3 [KO:K19475]
127560191  WAS/WASL-interacting protein family member 2 [KO:K19475]
127554554  WAS/WASL-interacting protein family member 1 [KO:K19475]
127563001  heat shock 70 kDa protein 6-like [KO:K03283]
127563002  heat shock 70 kDa protein 6-like [KO:K03283]
127563003  heat shock 70 kDa protein 6 [KO:K03283]
127554403  heat shock cognate 71 kDa protein [KO:K03283]
127561079  heat shock 70 kDa protein 1 [KO:K03283]
127561080  heat shock 70 kDa protein 1-like [KO:K03283]
127563193  putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526]
127537960  WASH complex subunit 4 [KO:K18465]
127544440  WASH complex subunit 5 [KO:K18464]
127539341  WASH complex subunit 1 [KO:K18461]
127537801  WASH complex subunit 3 isoform X1 [KO:K18463]
127559319  F-actin-capping protein subunit alpha-1 [KO:K10364]
127539425  F-actin-capping protein subunit alpha-2 [KO:K10364]
127539482  F-actin-capping protein subunit alpha-3 [KO:K10364]
127555778  F-actin-capping protein subunit beta isoform X1 [KO:K10365]
127545462  vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467]
127552095  vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466]
127554785  vacuolar protein sorting-associated protein 26B [KO:K18466]
127550670  vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468]
127555312  sorting nexin-12-like [KO:K17918]
127562061  sorting nexin-3 [KO:K17918]
127542373  sorting nexin-12 [KO:K17918]
127551143  ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
127547323  STAM-binding protein [KO:K11866] [EC:3.4.19.12]
127553068  ras-related protein Rab-7a [KO:K07897]
127560638  hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
127563989  signal transducing adapter molecule 1 [KO:K04705]
127554657  signal transducing adapter molecule 2 isoform X1 [KO:K04705]
127540664  tumor susceptibility gene 101 protein [KO:K12183]
127550580  multivesicular body subunit 12B isoform X1 [KO:K12186]
127544680  multivesicular body subunit 12A [KO:K12186]
127544592  vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
127558678  vacuolar protein sorting-associated protein 37D [KO:K12185]
127545418  vacuolar protein sorting-associated protein 37B [KO:K12185]
127539687  vacuolar protein sorting-associated protein 37C isoform X1 [KO:K12185]
127540670  vacuolar protein sorting-associated protein 37A isoform X1 [KO:K12185]
127560287  vacuolar-sorting protein SNF8 isoform X1 [KO:K12188]
127555218  vacuolar protein-sorting-associated protein 36 [KO:K12190]
127560100  vacuolar protein-sorting-associated protein 25 [KO:K12189]
127560661  charged multivesicular body protein 6 [KO:K12195]
127550329  charged multivesicular body protein 4b [KO:K12194]
127551090  charged multivesicular body protein 4a isoform X1 [KO:K12194]
127543719  charged multivesicular body protein 4c [KO:K24782]
127547464  charged multivesicular body protein 3 [KO:K12193]
127556917  charged multivesicular body protein 2a [KO:K12191]
127553565  charged multivesicular body protein 2b [KO:K12192]
127548340  charged multivesicular body protein 7 [KO:K15053]
127543681  vacuolar protein sorting-associated protein 4B [KO:K12196]
127547740  vacuolar protein sorting-associated protein 4A [KO:K12196]
127562274  vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
127541219  charged multivesicular body protein 1b-1-like [KO:K12197]
127542915  charged multivesicular body protein 1b-2 [KO:K12197]
127547772  charged multivesicular body protein 1a [KO:K12197]
127561953  charged multivesicular body protein 5 [KO:K12198]
127547716  IST1 homolog [KO:K19476]
127549334  programmed cell death 6-interacting protein [KO:K12200]
127551263  maspardin [KO:K19367]
127562388  cation-independent mannose-6-phosphate receptor [KO:K06564]
127562331  sorting nexin-2 [KO:K17917]
127551280  sorting nexin-1 [KO:K17917]
127549730  sorting nexin-6 isoform X1 [KO:K17920]
127540072  sorting nexin-32 [KO:K17920]
127548459  sorting nexin-5 [KO:K17920]
127550415  proto-oncogene tyrosine-protein kinase Src isoform X1 [KO:K05704] [EC:2.7.10.2]
127540068  GTPase HRas [KO:K02833]
127538217  interleukin-2 receptor subunit alpha [KO:K05068]
127538169  interleukin-2 receptor subunit beta [KO:K05069]
127542639  cytokine receptor common subunit gamma [KO:K05070]
127541249  transforming protein RhoA-like isoform X1 [KO:K04513]
127549354  transforming protein RhoA-like [KO:K04513]
127554850  transforming protein RhoA [KO:K04513]
127561112  BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751]
127561627  DLA class I histocompatibility antigen, A9/A9 alpha chain-like isoform X1 [KO:K06751]
127561733  class I histocompatibility antigen, Gogo-OKO alpha chain-like isoform X1 [KO:K06751]
127561629  patr class I histocompatibility antigen, B-2 alpha chain-like isoform X1 [KO:K06751]
127555253  folate receptor alpha-like [KO:K13649]
127563962  caveolin-1 isoform X1 [KO:K06278]
127564303  caveolin-2 [KO:K12958]
127548380  caveolin-3 [KO:K12959]
127548629  EH domain-containing protein 3 [KO:K12476]
127549273  EH domain-containing protein 4 [KO:K12477]
127539414  early endosome antigen 1 isoform X1 [KO:K12478]
127539208  ras-related protein Rab-5A [KO:K07887]
127564953  ras-related protein Rab-5B [KO:K07888]
127560131  ras-related protein Rab-5C [KO:K07889]
127558241  rab GTPase-binding effector protein 1 isoform X1 [KO:K12480]
127552332  rabenosyn-5 [KO:K12481]
127559670  ras-related protein Rab-4A [KO:K07879]
127550098  RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482]
127552104  RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482]
127562272  EH domain-containing protein 1-like [KO:K12483]
127540092  EH domain-containing protein 1 isoform X1 [KO:K12483]
127559123  vacuolar protein sorting-associated protein 45 [KO:K12479]
127554171  sorting nexin-4 isoform X1 [KO:K17919]
127548957  ras-related protein Rab-22A [KO:K07891]
127544025  ras-related protein Rab-31 [KO:K07891]
127548774  ras-related protein Rab-10 [KO:K07903]
127545044  ras-related protein Rab-8A [KO:K07901]
127545544  ras-related protein Rab-35 isoform X1 [KO:K07876]
127551247  ras-related protein Rab-11A [KO:K07904]
127545302  ras-related protein Rab-11B [KO:K07905]
127551626  rab11 family-interacting protein 2 isoform X1 [KO:K12484]
127547384  rab11 family-interacting protein 5 isoform X1 [KO:K12484]
127548226  rab11 family-interacting protein 1 isoform X1 [KO:K12484]
127550293  rab11 family-interacting protein 2-like [KO:K12484]
127551759  protrudin isoform X1 [KO:K19368]
127563991  kinesin-1 heavy chain [KO:K10396]
127538343  kinesin heavy chain isoform X1 [KO:K10396]
127554389  kinesin heavy chain [KO:K10396]
127542974  rab11 family-interacting protein 3 isoform X1 [KO:K12485]
127558958  rab11 family-interacting protein 4 isoform X1 [KO:K12485]
127564166  partitioning defective 3 homolog isoform X1 [KO:K04237]
127548914  partitioning defective 6 homolog beta [KO:K06093]
127544093  partitioning defective 6 homolog gamma [KO:K06093]
127547893  partitioning defective 6 homolog alpha isoform X1 [KO:K06093]
127561495  partitioning defective 6 homolog gamma-like [KO:K06093]
127555989  protein kinase C zeta type isoform X1 [KO:K18952] [EC:2.7.11.13]
127552867  protein kinase C iota type [KO:K06069] [EC:2.7.11.13]
127564730  cell division control protein 42 homolog [KO:K04393]
127555744  cell division control protein 42 homolog isoform X1 [KO:K04393]
127555481  stromal membrane-associated protein 2 [KO:K12486]
127561900  stromal membrane-associated protein 1 isoform X1 [KO:K12486]
127558889  ARF GTPase-activating protein GIT1 isoform X1 [KO:K05737]
127545609  ARF GTPase-activating protein GIT2 isoform X1 [KO:K12487]
127555722  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 [KO:K12488]
127544455  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488]
127548610  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488]
127556031  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 [KO:K12489]
127558296  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489]
127560893  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489]
127555105  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439]
127541771  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440]
127550035  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490]
127562971  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491]
127539035  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491]
127538220  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848]
127549017  ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492]
127538462  LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493]
127540976  ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493]
127549988  PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494]
127551518  PH and SEC7 domain-containing protein 1 [KO:K12494]
127547599  PH and SEC7 domain-containing protein 4 [KO:K12494]
127548295  PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494]
127564223  IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495]
127542694  LOW QUALITY PROTEIN: IQ motif and SEC7 domain-containing protein 2 [KO:K12495]
127553176  IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495]
127564410  cytohesin-3 isoform X1 [KO:K18441]
127556533  cytohesin-2 [KO:K18441]
127538177  cytohesin-4 [KO:K18441]
127560689  cytohesin-1 isoform X1 [KO:K18441]
127548886  brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442]
127543793  brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442]
127551506  Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443]
127558126  ADP-ribosylation factor 1-like isoform X1 [KO:K07937]
127538296  ADP-ribosylation factor 3 [KO:K07938]
127550517  ADP-ribosylation factor 4 [KO:K07939]
127539198  ADP-ribosylation factor 5 [KO:K07940]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
afz04060  Cytokine-cytokine receptor interaction
afz04070  Phosphatidylinositol signaling system
afz04130  SNARE interactions in vesicular transport
afz04142  Lysosome
afz04350  TGF-beta signaling pathway
KO pathway
ko04144   
LinkDB

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