KEGG   PATHWAY: bpas03018
Entry
bpas03018                   Pathway                                
Name
RNA degradation - Bombus pascuorum (common carder bee)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bpas03018  RNA degradation
bpas03018

Other DBs
GO: 0006401
Organism
Bombus pascuorum (common carder bee) [GN:bpas]
Gene
132914952  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
132911773  exosome complex component CSL4 [KO:K07573]
132905232  uncharacterized protein LOC132905232 [KO:K03679]
132905584  exosome complex component RRP40 [KO:K03681]
132910720  exosome complex component RRP43-like [KO:K12586]
132915123  exosome complex component MTR3-like isoform X1 [KO:K12587]
132910522  exosome complex component RRP42 isoform X1 [KO:K12589]
132909935  exosome complex component RRP41 [KO:K11600]
132912392  exosome complex component RRP46 [KO:K12590]
132905478  exosome complex component RRP45-like [KO:K03678]
132907462  exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
132910731  exosome component 10 [KO:K12591] [EC:3.1.13.-]
132909276  nuclear nucleic acid-binding protein C1D-like [KO:K12592]
132905642  M-phase phosphoprotein 6 [KO:K12593]
132910178  non-canonical poly(A) RNA polymerase protein Trf4-1-like [KO:K03514] [EC:2.7.7.19]
132910461  exosome RNA helicase MTR4 [KO:K12598] [EC:5.6.2.6]
132912503  superkiller complex protein 2 [KO:K12599] [EC:5.6.2.6]
132908975  tetratricopeptide repeat protein 37 [KO:K12600]
132914034  superkiller complex protein 8 [KO:K12602]
132909001  CCR4-NOT transcription complex subunit 6-like isoform X1 [KO:K12603] [EC:3.1.13.4]
132916510  CCR4-NOT transcription complex subunit 1 isoform X1 [KO:K12604]
132907055  regulator of gene activity isoform X1 [KO:K12605]
132906401  CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
132912256  alpha-protein kinase 1 isoform X1 [KO:K10643] [EC:2.3.2.27]
132915223  CCR4-NOT transcription complex subunit 7 isoform X1 [KO:K12581]
132911010  CCR4-NOT transcription complex subunit 9 [KO:K12606]
132916283  CCR4-NOT transcription complex subunit 10 [KO:K12607]
132905034  ATP-dependent DNA/RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
132916286  poly(A)-specific ribonuclease PARN-like isoform X1 [KO:K01148] [EC:3.1.13.4]
132910825  LOW QUALITY PROTEIN: pre-piRNA 3'-exonuclease trimmer-like [KO:K01148] [EC:3.1.13.4]
132910281  maternal B9.15 protein-like [KO:K14443]
132908347  protein BTG2-like [KO:K14443]
132905289  protein Tob1-like [KO:K14443]
132909136  polyadenylate-binding protein 1 [KO:K13126]
132911055  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 [KO:K12571] [EC:3.1.13.4]
132904476  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 [KO:K12572]
132911261  mRNA-decapping enzyme 1A [KO:K12611] [EC:3.-.-.-]
132914172  m7GpppN-mRNA hydrolase [KO:K12613] [EC:3.6.1.62]
132907009  ATP-dependent RNA helicase me31b [KO:K12614] [EC:5.6.2.7]
132908121  enhancer of mRNA-decapping protein 3 [KO:K12615]
132911013  enhancer of mRNA-decapping protein 4 [KO:K12616]
132910939  protein PAT1 homolog 1 isoform X1 [KO:K12617]
132914788  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
132912901  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
132910617  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
132909147  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
132905526  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
132905792  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
132916719  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
132910966  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
132906772  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
132911779  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
132911092  enolase [KO:K01689] [EC:4.2.1.11]
132904739  enolase-like isoform X1 [KO:K01689] [EC:4.2.1.11]
132912775  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
132908838  ATP-dependent 6-phosphofructokinase isoform X1 [KO:K00850] [EC:2.7.1.11]
132910403  heat shock 70 kDa protein cognate 5 [KO:K04043]
132910870  heat shock protein 60A-like [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
bpas03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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