KEGG   PATHWAY: dcc04120
Entry
dcc04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Dermochelys coriacea (leatherback sea turtle)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dcc04120  Ubiquitin mediated proteolysis
dcc04120

Other DBs
GO: 0016567
Organism
Dermochelys coriacea (leatherback sea turtle) [GN:dcc]
Gene
119844866  UBC; polyubiquitin-C isoform X1 [KO:K08770]
119848281  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
119853027  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
119859064  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X3 [KO:K03178] [EC:6.2.1.45]
119846968  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
119847348  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
119840983  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
119858289  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
119854887  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
119861219  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
119859800  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
119842001  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
119842047  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
119854794  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
119859506  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X2 [KO:K06689] [EC:2.3.2.23]
119859918  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
119863681  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
119851034  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
119852165  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
119863143  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
119844664  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
119860934  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
119863701  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X2 [KO:K10576] [EC:2.3.2.23]
119862333  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
119853201  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
119845056  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
119854707  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
119843477  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
119857611  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04552] [EC:2.3.2.23]
119846923  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
119850183  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
119843399  UBE2O; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
119847572  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
119862426  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
119852180  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
119848394  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
119855496  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
119846938  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
119851778  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X5 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
119849191  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
119852619  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
119850386  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
119843966  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
119850832  UBE3C; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
119862354  SMURF1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
119843168  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
119841894  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
119850483  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
119840970  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X2 [KO:K05630] [EC:2.3.2.26]
119861287  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
119862260  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
119856018  NEDD4L; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
119846962  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X2 [KO:K10592] [EC:2.3.2.26]
119850793  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X6 [KO:K10593] [EC:2.3.2.26]
119862336  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
119848244  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
119854722  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
119858885  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
119846729  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
119844978  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
119862078  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
119843581  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X2 [KO:K10598] [EC:5.2.1.8]
119857043  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
119854976  UBOX5; RING finger protein 37 [KO:K10600]
119845581  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
119848059  CBLC; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-C [KO:K04707] [EC:2.3.2.27]
119846645  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
119858421  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
119852618  PRKN; E3 ubiquitin-protein ligase parkin isoform X4 [KO:K04556] [EC:2.3.2.31]
119862208  protein PML-like isoform X2 [KO:K10054] [EC:2.3.2.-]
119862209  protein PML-like isoform X1 [KO:K10054] [EC:2.3.2.-]
119856996  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
119855899  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
119859774  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
119854247  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [KO:K10144] [EC:2.3.2.27]
119859759  inhibitor of apoptosis protein-like [KO:K16060]
119861110  E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
119841824  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X4 [KO:K16061]
119862291  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X4 [KO:K04706] [EC:2.3.2.-]
119855556  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
119847694  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X3 [KO:K16064] [EC:2.3.2.-]
119848395  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
119859280  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
119851193  NHLRC1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
119862256  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
119848890  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
119852751  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
119850063  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X2 [KO:K08285] [EC:2.3.2.27]
119844089  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
119844585  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X4 [KO:K10608] [EC:2.3.2.27]
119847713  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
119851150  CUL1; cullin-1 [KO:K03347]
119860288  SKP1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
119858227  BTRC; F-box/WD repeat-containing protein 1A isoform X13 [KO:K03362]
119859951  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
119855800  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
119854516  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
119852001  F-box/WD repeat-containing protein 7-like [KO:K10260]
119845001  FBXO2; F-box only protein 2 [KO:K10099]
119855980  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
119850944  CUL2; cullin-2 isoform X1 [KO:K03870]
119850727  ELOC; elongin-C isoform X1 [KO:K03872]
119856775  ELOB; elongin-B [KO:K03873]
119858959  elongin-B-like [KO:K03873]
119858615  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
119861318  CUL3; cullin-3 [KO:K03869]
119846011  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
119861213  KLHL13; kelch-like protein 13 isoform X2 [KO:K10447]
119844067  kelch-like protein 13 isoform X1 [KO:K10447]
119848736  RHOBTB2; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2 [KO:K07868]
119859393  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
119854380  LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2-like [KO:K07868]
119861255  CUL4B; cullin-4B [KO:K10609]
119855580  CUL4A; cullin-4A isoform X1 [KO:K10609]
119856706  DDB1; LOW QUALITY PROTEIN: DNA damage-binding protein 1 [KO:K10610]
119857834  DDB2; DNA damage-binding protein 2 isoform X4 [KO:K10140]
119855917  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
119862699  DET1; DET1 homolog isoform X1 [KO:K10571]
119861030  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
119855095  CUL5; cullin-5 isoform X2 [KO:K10612]
119862532  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
119847228  suppressor of cytokine signaling 3-like [KO:K04696]
119842904  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
119843794  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
119843140  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
119844060  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
119860496  CDC20; cell division cycle protein 20 homolog [KO:K03363]
119848356  FZR1; fizzy-related protein homolog [KO:K03364]
119852941  ANAPC1; anaphase-promoting complex subunit 1 isoform X3 [KO:K03348]
119848928  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
119854666  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
119843791  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
119850354  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
119843707  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
119860327  CDC23; cell division cycle protein 23 homolog [KO:K03355]
119854460  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
119844175  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
119861211  ANAPC13; anaphase-promoting complex subunit 13 isoform X2 [KO:K12456]
119861604  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
119858265  ANAPC16; anaphase-promoting complex subunit 16 isoform X3 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dcc03050  Proteasome
KO pathway
ko04120   
LinkDB

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