KEGG   PATHWAY: ely04622
Entry
ely04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Epinephelus lanceolatus (giant grouper)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
ely04622  RIG-I-like receptor signaling pathway
ely04622

Organism
Epinephelus lanceolatus (giant grouper) [GN:ely]
Gene
117251370  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
117257175  znfx1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
117266710  mucin-2-like [KO:K12648]
117266733  polycystic kidney disease protein 1-like 3 [KO:K12648]
117268501  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
117267267  traf3; TNF receptor-associated factor 3 [KO:K03174]
117251114  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
117266148  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
117268764  TANK-binding kinase 1-binding protein 1-like isoform X1 [KO:K12652]
117247331  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
117258475  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
117249427  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
117256447  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
117247071  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
117261911  irf7; interferon regulatory factor 7 [KO:K09447]
117268730  ifnphi1; interferon phi 1 [KO:K05414]
117247002  uncharacterized protein LOC117247002 [KO:K05414]
117247636  interferon a3-like [KO:K05414]
117266895  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
117258051  fadd; FAS-associated death domain protein [KO:K02373]
117272378  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
117271493  casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
117271616  caspase-8-like [KO:K04398] [EC:3.4.22.61]
117249157  casp10; caspase-8 [KO:K04398] [EC:3.4.22.61]
117247242  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
117247863  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
117252591  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
117270437  nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734]
117267593  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
117260994  LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
117246128  rela; transcription factor p65 [KO:K04735]
117269357  traf2b; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
117270142  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
117252396  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
117270756  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
117267585  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
117257648  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
117269589  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
117246944  mapk8b; LOW QUALITY PROTEIN: mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
117248336  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
117260760  mapk9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
117257217  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
117258336  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
117258429  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
117258644  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
117253792  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
117248907  mapk12b; mitogen-activated protein kinase 12b [KO:K04441] [EC:2.7.11.24]
117249233  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
117246314  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
117255694  interleukin-8-like [KO:K10030]
117265588  tnfb; tumor necrosis factor b (TNF superfamily, member 2) [KO:K03156]
117263947  tumor necrosis factor-like [KO:K03156]
117260285  il12a; interleukin-12 subunit alpha [KO:K05406]
117253185  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
117272368  il12bb; interleukin-12 subunit beta [KO:K05425]
117260978  il12ba; interleukin 12Ba isoform X1 [KO:K05425]
117265724  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
117268608  E3 ubiquitin-protein ligase TRIM39-like isoform X1 [KO:K10652] [EC:2.3.2.27]
117257929  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
117259972  ftr86; finTRIM family, member 86 [KO:K10652] [EC:2.3.2.27]
117254576  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
117272826  zgc:92594; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
117255355  trim25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
117255357  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
117256408  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
117246124  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
117254132  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
117255905  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
117266437  atg5; autophagy protein 5 [KO:K08339]
117265392  atg12; ubiquitin-like protein ATG12 [KO:K08336]
117259736  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
117260693  sting1; stimulator of interferon genes protein isoform X1 [KO:K12654]
117258485  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
117257879  sike1; suppressor of IKBKE 1 [KO:K12656]
117258268  suppressor of IKBKE 1-like [KO:K12656]
117251541  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
117255331  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
117254810  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
117246081  tkfc; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
ely04010  MAPK signaling pathway
ely04120  Ubiquitin mediated proteolysis
ely04210  Apoptosis
KO pathway
ko04622   
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