KEGG   PATHWAY: gcl04622
Entry
gcl04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Gymnogyps californianus (California condor)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
gcl04622  RIG-I-like receptor signaling pathway
gcl04622

Organism
Gymnogyps californianus (California condor) [GN:gcl]
Gene
127027565  antiviral innate immune response receptor RIG-I [KO:K12646] [EC:5.6.2.6]
127018359  interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
127023361  NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
127015750  LOW QUALITY PROTEIN: mitochondrial antiviral-signaling protein [KO:K12648]
127026463  ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
127016708  TNF receptor-associated factor 3 isoform X1 [KO:K03174]
127018182  TRAF family member-associated NF-kappa-B activator [KO:K12650]
127012605  5-azacytidine-induced protein 2 [KO:K12651]
127025833  serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
127026266  inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
127017145  interferon regulatory factor 7 [KO:K09447]
127027653  interferon epsilon-like [KO:K05414]
127027303  interferon-like [KO:K05415]
127027304  interferon-like [KO:K05415]
127027305  interferon-like [KO:K05415]
127027306  interferon-like [KO:K05415]
127021183  tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
127017335  FAS-associated death domain protein [KO:K02373]
127012916  receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
127018346  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
127018651  caspase-8-like [KO:K04398] [EC:3.4.22.61]
127018711  caspase-10 [KO:K04400] [EC:3.4.22.63]
127017902  inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
127025388  inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
127028226  LOW QUALITY PROTEIN: NF-kappa-B inhibitor beta [KO:K02581]
127017313  NF-kappa-B inhibitor alpha [KO:K04734]
127015466  LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
127023695  TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
127014135  mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
127017259  TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
127027572  mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
127027897  mitogen-activated protein kinase kinase kinase 1-like [KO:K04416] [EC:2.7.11.25]
127022185  mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
127017578  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
127015438  mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
127022393  mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
127026124  mitogen-activated protein kinase 13 isoform X1 [KO:K04441] [EC:2.7.11.24]
127026219  mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
127015802  interleukin-8 [KO:K10030]
127015805  interleukin-8-like [KO:K10030]
127016099  interleukin-8-like [KO:K10030]
127016100  interleukin-8-like [KO:K10030]
127020209  interleukin-12 subunit alpha [KO:K05406]
127022112  interleukin-12 subunit beta [KO:K05425]
127026987  double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
127023979  E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
127020935  ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
127029924  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
127013436  E3 ubiquitin-protein ligase RNF125 isoform X1 [KO:K12170] [EC:2.3.2.27]
127015101  autophagy protein 5 isoform X1 [KO:K08339]
127027508  ubiquitin-like protein ATG12 [KO:K08336]
127025809  NLR family member X1 [KO:K12653]
127022010  stimulator of interferon genes protein [KO:K12654]
127026280  suppressor of IKBKE 1 isoform X1 [KO:K12656]
127029552  ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
127028724  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
127016555  triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
gcl04010  MAPK signaling pathway
gcl04120  Ubiquitin mediated proteolysis
gcl04210  Apoptosis
KO pathway
ko04622   
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