Entry
Name
Endocytosis - Sceloporus undulatus (fence lizard)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Sceloporus undulatus (fence lizard) [GN:
sund ]
Gene
121921480 ZFYVE16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
121932865 uncharacterized protein LOC121932865 isoform X1 [KO:K10054 ] [EC:2.3.2.-]
121921670 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
121934446 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
121926098 SH3KBP1; LOW QUALITY PROTEIN: SH3 domain-containing kinase-binding protein 1 [KO:K12470 ]
121922525 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
121928304 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
121920600 LDLR; LOW QUALITY PROTEIN: low-density lipoprotein receptor [KO:K12473 ]
121919980 low density lipoprotein receptor adapter protein 1-like isoform X1 [KO:K12474 ]
121915444 LDLRAP1; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
121930685 WASL; neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612 ]
121936035 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
121932650 WIPF3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
121928699 DNAJC6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
121936145 CAPZB; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
121916752 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
121935799 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
121925786 VPS26A; LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A [KO:K18466 ]
121914149 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
121922713 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
121929642 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
121919763 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
121928407 VPS28; vacuolar protein sorting-associated protein 28 homolog isoform X1 [KO:K12184 ]
121916603 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
121916911 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
121915220 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
121932130 VPS37A; LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 37A [KO:K12185 ]
121917097 VPS36; vacuolar protein-sorting-associated protein 36 isoform X1 [KO:K12190 ]
121935700 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
121935052 CHMP7; charged multivesicular body protein 7 isoform X1 [KO:K15053 ]
121937462 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
121927780 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
121933524 VTA1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
121933558 programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
121928273 IGF2R; LOW QUALITY PROTEIN: cation-independent mannose-6-phosphate receptor [KO:K06564 ]
121930375 IL2RB; interleukin-2 receptor subunit beta isoform X1 [KO:K05069 ]
121937400 IL2RG; cytokine receptor common subunit gamma isoform X1 [KO:K05070 ]
121922430 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
121923018 H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1 [KO:K06751 ]
121923025 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
121923203 LOW QUALITY PROTEIN: major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
121923946 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
121924284 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
121924285 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
121924287 H-2 class I histocompatibility antigen, Q9 alpha chain-like isoform X1 [KO:K06751 ]
121922647 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
121926400 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
121916046 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
121934491 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
121925306 RAB11FIP2; rab11 family-interacting protein 2 isoform X1 [KO:K12484 ]
121923317 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
121914239 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
121933097 PARD3; LOW QUALITY PROTEIN: partitioning defective 3 homolog [KO:K04237 ]
121914965 PARD6A; partitioning defective 6 homolog alpha isoform X1 [KO:K06093 ]
121936654 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
121935339 SMAP1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
121929749 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like [KO:K12488 ]
121919821 ASAP2; LOW QUALITY PROTEIN: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 [KO:K12488 ]
121930109 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
121915205 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
121934705 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
121924666 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
121936796 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
121932022 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
121929327 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
121933022 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 [KO:K12491 ]
121930650 AGAP1; LOW QUALITY PROTEIN: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 [KO:K12491 ]
121920835 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
121928068 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
121937537 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
121930785 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
121932670 PH and SEC7 domain-containing protein 4-like isoform X1 [KO:K12494 ]
121922321 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
121922689 IQSEC2; IQ motif and SEC7 domain-containing protein 2 isoform X1 [KO:K12495 ]
121930356 IQSEC3; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
121921553 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
121928166 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
121929551 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
121924912 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
sund04060 Cytokine-cytokine receptor interaction
sund04070 Phosphatidylinositol signaling system
sund04130 SNARE interactions in vesicular transport
KO pathway
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