KEGG   PATHWAY: sund04623
Entry
sund04623                   Pathway                                
Name
Cytosolic DNA-sensing pathway - Sceloporus undulatus (fence lizard)
Description
Specific families of pattern recognition receptors are responsible for detecting foreign DNA from invading microbes or host cells and generating innate immune responses. DAI is the first identified sensor of cytosolic DNA which activates the IRF and NF-{kappa}B transcription factors, leading to production of type I interferon and other cytokines. The second type of cytoplasmic DNA sensor is AIM2. Upon sensing DNA, AIM2 triggers the assembly of the inflammasome, culminating in interleukin maturation. In addition to these receptors, there is a mechanism to sense foreign DNA, with the host RNA polymerase III converting the DNA into RNA for recognition by the RNA sensor RIG-I. These pathways provide various means to alert the cell.
Class
Organismal Systems; Immune system
Pathway map
sund04623  Cytosolic DNA-sensing pathway
sund04623

Organism
Sceloporus undulatus (fence lizard) [GN:sund]
Gene
121926702  POLR3A; DNA-directed RNA polymerase III subunit RPC1 isoform X1 [KO:K03018] [EC:2.7.7.6]
121930773  POLR3B; DNA-directed RNA polymerase III subunit RPC2 isoform X1 [KO:K03021] [EC:2.7.7.6]
121915313  POLR3C; DNA-directed RNA polymerase III subunit RPC3 [KO:K03023]
121935173  POLR3D; DNA-directed RNA polymerase III subunit RPC4 [KO:K03026]
121914341  POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X1 [KO:K14721]
121918868  POLR1C; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1 [KO:K03027]
121914477  POLR3K; DNA-directed RNA polymerase III subunit RPC10 [KO:K03019]
121937374  DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 [KO:K03020]
121931973  POLR3H; DNA-directed RNA polymerase III subunit RPC8 [KO:K03022]
121916037  POLR3GL; DNA-directed RNA polymerase III subunit RPC7-like [KO:K03024]
121916705  POLR2E; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC1 [KO:K03013]
121930320  POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 [KO:K03014]
121926503  POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 [KO:K03016]
121930027  POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 [KO:K03009]
121934267  DNA-directed RNA polymerases I, II, and III subunit RPABC5-like [KO:K03007]
121930152  POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
121923815  DDX58; antiviral innate immune response receptor RIG-I isoform X1 [KO:K12646] [EC:5.6.2.6]
121930466  MAVS; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
121931415  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
121915610  RELA; transcription factor p65 isoform X1 [KO:K04735]
121935009  IL6; interleukin-6 isoform X1 [KO:K05405]
121922374  G3BP1; ras GTPase-activating protein-binding protein 1 isoform X1 [KO:K17265] [EC:5.6.2.5 5.6.2.3]
121916199  cyclic GMP-AMP synthase-like [KO:K17834] [EC:2.7.7.86]
121919775  CGAS; cyclic GMP-AMP synthase [KO:K17834] [EC:2.7.7.86]
121928901  STING1; stimulator of interferon genes protein [KO:K12654]
121934730  palmitoyltransferase ZDHHC11-like isoform X1 [KO:K20027] [EC:2.3.1.225]
121914231  ZDHHC1; palmitoyltransferase ZDHHC1 [KO:K20027] [EC:2.3.1.225]
121922406  probable ATP-dependent RNA helicase DDX41 [KO:K13116] [EC:5.6.2.7]
121931127  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
121928472  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
121932898  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
121920016  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
121923586  interferon beta-like [KO:K05414]
121924215  interferon beta-like [KO:K05414]
121920523  interferon alpha-13-like [KO:K05414]
121920524  interferon alpha-13-like [KO:K05414]
121920526  interferon beta-like [KO:K05414]
121920528  interferon beta-like [KO:K05414]
121920529  interferon alpha-11-like [KO:K05414]
121929823  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
121932626  RIPK3; receptor-interacting serine/threonine-protein kinase 3 isoform X1 [KO:K08847] [EC:2.7.11.1]
121922695  IKBKG; NF-kappa-B essential modulator [KO:K07210]
121925441  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
121933447  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
121915161  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
121919325  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
121916772  C-C motif chemokine 4-like [KO:K12964]
121916773  C-C motif chemokine 5-like [KO:K12499]
121916905  C-C motif chemokine 5-like [KO:K12499]
121935506  apoptosis-associated speck-like protein containing a CARD [KO:K12799]
121916819  caspase-1-like [KO:K01370] [EC:3.4.22.36]
121914776  mixed lineage kinase domain-like protein [KO:K08849] [EC:2.7.11.1]
121930895  CASP3; caspase-3 [KO:K02187] [EC:3.4.22.56]
121934729  caspase-3-like [KO:K04397] [EC:3.4.22.60]
121925218  CASP7; caspase-7 isoform X1 [KO:K04397] [EC:3.4.22.60]
121935148  GSDME; gasdermin-E [KO:K22146]
121932679  IL1B; interleukin-1 beta [KO:K04519]
121934420  interleukin-18-like [KO:K05482]
121915309  ADAR; LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
121928424  SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [KO:K22544] [EC:3.1.5.-]
121920344  TREX1; three-prime repair exonuclease 1 [KO:K10790] [EC:3.1.11.2]
121929999  DNASE2B; deoxyribonuclease-2-beta [KO:K01158] [EC:3.1.22.1]
121920659  DNASE2; deoxyribonuclease-2-alpha isoform X1 [KO:K01158] [EC:3.1.22.1]
Compound
C00039  DNA
C20640  Cyclic GMP-AMP
Reference
  Authors
Yanai H, Savitsky D, Tamura T, Taniguchi T
  Title
Regulation of the cytosolic DNA-sensing system in innate immunity: a current view.
  Journal
Curr Opin Immunol 21:17-22 (2009)
DOI:10.1016/j.coi.2009.01.005
Reference
  Authors
Vilaysane A, Muruve DA
  Title
The innate immune response to DNA.
  Journal
Semin Immunol 21:208-14 (2009)
DOI:10.1016/j.smim.2009.05.006
Reference
  Authors
Takeshita F, Ishii KJ
  Title
Intracellular DNA sensors in immunity.
  Journal
Curr Opin Immunol 20:383-8 (2008)
DOI:10.1016/j.coi.2008.05.009
Reference
  Authors
Takaoka A, Shinohara S
  Title
DNA sensors in innate immune system.
  Journal
Uirusu 58:37-46 (2008)
DOI:10.2222/jsv.58.37
Reference
  Authors
Takaoka A, Taniguchi T
  Title
Cytosolic DNA recognition for triggering innate immune responses.
  Journal
Adv Drug Deliv Rev 60:847-57 (2008)
DOI:10.1016/j.addr.2007.12.002
Reference
  Authors
Kaiser WJ, Upton JW, Mocarski ES
  Title
Receptor-interacting protein homotypic interaction motif-dependent control of NF-kappa B activation via the DNA-dependent activator of IFN regulatory factors.
  Journal
J Immunol 181:6427-34 (2008)
DOI:10.4049/jimmunol.181.9.6427
Reference
  Authors
Rebsamen M, Heinz LX, Meylan E, Michallet MC, Schroder K, Hofmann K, Vazquez J, Benedict CA, Tschopp J
  Title
DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB.
  Journal
EMBO Rep 10:916-22 (2009)
DOI:10.1038/embor.2009.109
Reference
  Authors
Wang Z, Choi MK, Ban T, Yanai H, Negishi H, Lu Y, Tamura T, Takaoka A, Nishikura K, Taniguchi T
  Title
Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules.
  Journal
Proc Natl Acad Sci U S A 105:5477-82 (2008)
DOI:10.1073/pnas.0801295105
Reference
  Authors
Stetson DB, Ko JS, Heidmann T, Medzhitov R
  Title
Trex1 prevents cell-intrinsic initiation of autoimmunity.
  Journal
Cell 134:587-98 (2008)
DOI:10.1016/j.cell.2008.06.032
Reference
  Authors
Schroder K, Muruve DA, Tschopp J
  Title
Innate immunity: cytoplasmic DNA sensing by the AIM2 inflammasome.
  Journal
Curr Biol 19:R262-5 (2009)
DOI:10.1016/j.cub.2009.02.011
Reference
  Authors
Krieg AM
  Title
AIMing 2 detect foreign DNA.
  Journal
Sci Signal 2:pe39 (2009)
DOI:10.1126/scisignal.277pe39
Reference
  Authors
O'Neill LA
  Title
DNA makes RNA makes innate immunity.
  Journal
Cell 138:428-30 (2009)
DOI:10.1016/j.cell.2009.07.021
Reference
  Authors
Ishii KJ, Coban C, Kato H, Takahashi K, Torii Y, Takeshita F, Ludwig H, Sutter G, Suzuki K, Hemmi H, Sato S, Yamamoto M, Uematsu S, Kawai T, Takeuchi O, Akira S
  Title
A Toll-like receptor-independent antiviral response induced by double-stranded B-form DNA.
  Journal
Nat Immunol 7:40-8 (2006)
DOI:10.1038/ni1282
Reference
  Authors
Cao X
  Title
New DNA-sensing pathway feeds RIG-I with RNA.
  Journal
Nat Immunol 10:1049-51 (2009)
DOI:10.1038/ni1009-1049
Reference
  Authors
Sun L, Wu J, Du F, Chen X, Chen ZJ
  Title
Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
  Journal
Science 339:786-91 (2013)
DOI:10.1126/science.1232458
Reference
  Authors
Gao M, He Y, Tang H, Chen X, Liu S, Tao Y
  Title
cGAS/STING: novel perspectives of the classic pathway.
  Journal
Mol Biomed 1:7 (2020)
DOI:10.1186/s43556-020-00006-z
Reference
  Authors
Benjamin P, Sudhakar S, D'Arco F, Lobel U, Carney O, Roux CJ, Boddaert N, Hemingway C, Eleftheriou D, Mankad K
  Title
Spectrum of Neuroradiologic Findings Associated with Monogenic Interferonopathies.
  Journal
AJNR Am J Neuroradiol 43:2-10 (2022)
DOI:10.3174/ajnr.A7362
Reference
  Authors
Place DE, Lee S, Kanneganti TD
  Title
PANoptosis in microbial infection.
  Journal
Curr Opin Microbiol 59:42-49 (2021)
DOI:10.1016/j.mib.2020.07.012
Reference
  Authors
Jiang W, Deng Z, Dai X, Zhao W
  Title
PANoptosis: A New Insight Into Oral Infectious Diseases.
  Journal
Front Immunol 12:789610 (2021)
DOI:10.3389/fimmu.2021.789610
Reference
  Authors
Wang Y, Kanneganti TD
  Title
From pyroptosis, apoptosis and necroptosis to PANoptosis: A mechanistic compendium of programmed cell death pathways.
  Journal
Comput Struct Biotechnol J 19:4641-4657 (2021)
DOI:10.1016/j.csbj.2021.07.038
Related
pathway
sund04120  Ubiquitin mediated proteolysis
sund04210  Apoptosis
sund04217  Necroptosis
sund04621  NOD-like receptor signaling pathway
sund04622  RIG-I-like receptor signaling pathway
KO pathway
ko04623   
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