KEGG   PATHWAY: sund04120
Entry
sund04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Sceloporus undulatus (fence lizard)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
sund04120  Ubiquitin mediated proteolysis
sund04120

Other DBs
GO: 0016567
Organism
Sceloporus undulatus (fence lizard) [GN:sund]
Gene
121914160  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
121914359  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
121914426  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
121914505  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
121914641  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
121914672  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
121914826  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
121914873  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
121915107  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
121915312  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
121915331  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
121915629  ANAPC1; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 1 [KO:K03348]
121915983  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04552] [EC:2.3.2.23]
121916095  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
121916237  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K04707] [EC:2.3.2.27]
121916519  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
121916625  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
121916695  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
121916722  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
121916737  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
121916742  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
121916915  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
121917159  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
121917208  [KO:K22517] [EC:2.3.2.27]
121917254  [KO:K22517] [EC:2.3.2.27]
121919028  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
121919545  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
121920916  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
121920943  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
121921171  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
121921427  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
121921510  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
121921541  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
121921672  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
121921732  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
121921828  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
121922170  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
121922239  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
121922277  CDC23; LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [KO:K03355]
121922316  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
121922358  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
121922484  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
121922517  [KO:K10582] [EC:2.3.2.23]
121922522  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
121922537  [KO:K20217] [EC:2.3.2.23]
121922749  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
121922796  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
121922819  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
121922843  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
121923673  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
121924100  FBXO4; F-box only protein 4 [KO:K10291]
121924761  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
121924940  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
121925382  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
121925386  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
121925506  CUL5; cullin-5 [KO:K10612]
121925524  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
121925646  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
121925660  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
121925685  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
121925731  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
121925827  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
121925967  [KO:K03872]
121926095  CUL3; cullin-3 [KO:K03869]
121926386  [KO:K10609]
121926396  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
121926426  AIRE; autoimmune regulator [KO:K10603]
121926490  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
121926573  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
121926885  [KO:K10260]
121926944  [KO:K03353]
121927176  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
121927577  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
121927586  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
121927602  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
121928144  [KO:K03872]
121928299  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
121928360  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
121928707  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
121928729  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
121929085  [KO:K02927]
121929150  [KO:K10593] [EC:2.3.2.26]
121929519  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
121929536  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
121929559  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
121929870  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
121930067  CDC20; cell division cycle protein 20 homolog [KO:K03363]
121930101  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
121930451  FBXW11; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 11 [KO:K03362]
121930507  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
121930514  [KO:K07868]
121930599  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
121930613  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
121930742  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
121930774  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
121930967  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
121930999  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
121931276  UBOX5; RING finger protein 37 [KO:K10600]
121931388  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
121931424  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
121931474  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
121932202  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
121932208  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
121932531  CUL1; cullin-1 [KO:K03347]
121932606  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
121932865  [KO:K10054] [EC:2.3.2.-]
121932867  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
121933039  ELOB; elongin-B isoform X1 [KO:K03873]
121933109  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
121933218  NEDD4; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
121933237  RHOBTB2; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2 [KO:K07868]
121934082  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
121934107  CUL2; cullin-2 [KO:K03870]
121934136  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
121934165  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
121934341  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
121934381  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
121934402  DDB1; DNA damage-binding protein 1 [KO:K10610]
121934432  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
121934620  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
121934711  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
121934862  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
121934882  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
121934909  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
121935320  [KO:K04696]
121935433  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
121935568  DET1; DET1 homolog [KO:K10571]
121936148  FBXO2; F-box only protein 2 [KO:K10099]
121936212  [KO:K10447]
121936222  FZR1; fizzy-related protein homolog [KO:K03364]
121936254  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
121936294  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
121936318  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
121936325  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
121936672  CUL4B; cullin-4B [KO:K10609]
121936742  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
121936807  [KO:K04725] [EC:2.3.2.27]
121936928  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
121937024  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
121937067  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
121937233  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
121937294  [KO:K10447]
121937574  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
sund03050  Proteasome
KO pathway
ko04120   

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