Entry
Name
Endocytosis - Sturnus vulgaris (common starling)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Sturnus vulgaris (common starling) [GN:
svg ]
Gene
106863915 EHD2; LOW QUALITY PROTEIN: EH domain-containing protein 2 [KO:K12469 ]
106861527 ZFYVE16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
106865043 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
106852157 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
106852875 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
106861391 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
106849789 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
106857125 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
106858797 LDLRAP1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
106860380 low density lipoprotein receptor adapter protein 1-like isoform X1 [KO:K12474 ]
106854070 WASL; neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612 ]
106855362 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
106862221 DNAJC6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
106856396 CAPZB; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
106852410 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
106857316 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
106857485 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
106856794 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
106859944 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
106863708 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
106863720 STAM; LOW QUALITY PROTEIN: signal transducing adapter molecule 1 [KO:K04705 ]
106853200 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
106864182 VPS28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
106852363 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
106862542 VPS37D; vacuolar protein sorting-associated protein 37D isoform X1 [KO:K12185 ]
106854685 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
106851486 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
106848750 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
106858719 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
106850826 VPS4B; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
106861281 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
106860676 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
106852035 CHMP1A; charged multivesicular body protein 1a isoform X1 [KO:K12197 ]
106860005 PDCD6IP; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
106851870 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
106864610 LOW QUALITY PROTEIN: class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
106864696 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
106864697 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
106860245 RABEP1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
106859586 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
106857333 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
106862363 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
106854304 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
106860611 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
106865124 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
106856635 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 [KO:K12488 ]
106861851 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 [KO:K12488 ]
106858856 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 [KO:K12489 ]
106860807 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
106856588 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
106850014 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
106861321 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
106861802 AGAP3; LOW QUALITY PROTEIN: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 [KO:K12491 ]
106861982 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
106862644 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 [KO:K17848 ]
106851711 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
106860953 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
106856514 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493 ]
106856782 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
106863812 IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
106849407 IQSEC3; IQ motif and SEC7 domain-containing protein 3 [KO:K12495 ]
106853060 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
106851228 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
106855329 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
svg04060 Cytokine-cytokine receptor interaction
svg04070 Phosphatidylinositol signaling system
svg04130 SNARE interactions in vesicular transport
KO pathway
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