KEGG   PATHWAY: pavi03420
Entry
pavi03420                   Pathway                                
Name
Nucleotide excision repair - Prunus avium (sweet cherry)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
pavi03420  Nucleotide excision repair
pavi03420

Other DBs
GO: 0006289
Organism
Prunus avium (sweet cherry) [GN:pavi]
Gene
110744292  [KO:K10740]
110744659  [KO:K03016]
110744782  [KO:K10740]
110745335  [KO:K02325] [EC:2.7.7.7]
110745705  [KO:K03013]
110745706  [KO:K03013]
110745961  [KO:K06634]
110746319  [KO:K03868] [EC:2.3.2.32]
110746323  [KO:K03009]
110747017  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
110747416  [KO:K03012]
110748081  [KO:K03868] [EC:2.3.2.32]
110748285  [KO:K03016]
110749279  [KO:K07466]
110749525  [KO:K03011]
110749841  [KO:K10844] [EC:5.6.2.3]
110750517  [KO:K10755]
110750574  [KO:K10756]
110750614  [KO:K03143]
110751190  [KO:K02327] [EC:2.7.7.7]
110752139  [KO:K10756]
110753209  [KO:K03007]
110753318  [KO:K07466]
110753421  [KO:K10739]
110753654  [KO:K10845]
110755129  [KO:K10838]
110755249  [KO:K03016]
110755298  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
110755479  [KO:K10610]
110756073  [KO:K10756]
110756249  [KO:K02325] [EC:2.7.7.7]
110756314  [KO:K03008]
110756441  [KO:K10848] [EC:3.1.-.-]
110756460  [KO:K10846]
110756952  [KO:K10842]
110757144  [KO:K10839]
110757170  [KO:K10839]
110757479  [KO:K10841]
110757547  [KO:K03504]
110757607  [KO:K23720]
110758137  [KO:K02335] [EC:2.7.7.7]
110758238  [KO:K10839]
110758564  [KO:K03505]
110758733  [KO:K10140]
110759255  [KO:K04802]
110759258  [KO:K04802]
110759356  [KO:K04802]
110759384  [KO:K03014]
110759394  [KO:K10756]
110759598  [KO:K10755]
110759682  [KO:K10849]
110760147  [KO:K03009]
110760358  [KO:K03015]
110760526  [KO:K03015]
110761372  [KO:K03006] [EC:2.7.7.6]
110761619  [KO:K03014]
110762496  [KO:K10843] [EC:5.6.2.4]
110762497  [KO:K04802]
110763912  [KO:K03017]
110765766  [KO:K03141]
110766149  [KO:K03141]
110766738  [KO:K03010] [EC:2.7.7.6]
110766805  [KO:K03144]
110768275  [KO:K07466]
110768471  [KO:K03013]
110768612  [KO:K03012]
110769275  [KO:K03868] [EC:2.3.2.32]
110769398  [KO:K10754]
110769665  [KO:K10839]
110769955  [KO:K02326] [EC:2.7.7.7]
110770759  [KO:K02328]
110771269  [KO:K03142]
110772470  [KO:K10570]
110772670  [KO:K02324] [EC:2.7.7.7]
110773624  [KO:K03012]
110773723  [KO:K10756]
110774021  [KO:K10609]
110774334  [KO:K03013]
110774535  [KO:K10739]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
pavi03020  RNA polymerase
pavi04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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